Name: Salibacterium aidingense 17-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1284

Type strain:

Species: Salibacterium aidingense

Strain Designation: 17-5

Culture col. no.: DSM 18341, CGMCC 1.3227

Strain history: <- P.-J. Zhou and Y. Xue, Chinese Acad. Sci. (CAS), Beijing; 17-5

NCBI tax ID(s): 1121085 (strain), 384933 (species)

SI-ID 406887

DSM 18341

Section

Salibacterium aidingense 17-5 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sediment sample from the salt lake Ai-Ding.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salibacterium*
	Species	**Salibacterium aidingense**
	Full Scientific Name (LPSN)	Salibacterium aidingense (Xue et al. 2008) Gupta et al. 2020

Synonym

Bacillus aidingensis

Information on morphological and physiological properties Morphology

[Ref.: #31190]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31190]	Cell length	1.3-2.5 µm

[Ref.: #31190]	Cell width	0.2-0.4 µm

[Ref.: #31190]	Cell shape	rod-shaped

[Ref.: #31190]	Motility	yes

[Ref.: #31190]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7515]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #7515]

Culture medium growth

[Ref.: #7515]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7515]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7515]	growth	30 °C
[Ref.: #31190]	growth	22-44 °C
[Ref.: #31190]	optimum	37 °C

[Ref.: #7515]	Temperature range	mesophilic
[Ref.: #31190]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31190]			optimum	7.2
[Ref.: #31190]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31190]

Oxygen tolerance

aerobe

[Ref.: #31190]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31190]		NaCl		growth	08-33	%
[Ref.: #31190]		NaCl		optimum	12	%

[Ref.: #31190]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31190]	cellobiose ChEBI	+	carbon source
[Ref.: #31190]	esculin ChEBI	+	hydrolysis
[Ref.: #31190]	fructose ChEBI	+	carbon source
[Ref.: #31190]	galactose ChEBI	+	carbon source
[Ref.: #31190]	glucose ChEBI	+	carbon source
[Ref.: #31190]	glycerol ChEBI	+	carbon source
[Ref.: #31190]	maltose ChEBI	+	carbon source
[Ref.: #31190]	mannose ChEBI	+	carbon source
[Ref.: #31190]	melibiose ChEBI	+	carbon source
[Ref.: #31190]	nitrate ChEBI	+	reduction
[Ref.: #31190]	raffinose ChEBI	+	carbon source
[Ref.: #31190]	salicin ChEBI	+	carbon source
[Ref.: #31190]	sucrose ChEBI	+	carbon source
[Ref.: #31190]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31190]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31190]		catalase	+	1.11.1.6
[Ref.: #31190]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7515]	Sample type/isolated from	sediment sample from the salt lake Ai-Ding
[Ref.: #7515]	Geographic location (country and/or sea, region)	Xin-Jiang Province
[Ref.: #7515]	Country	China
[Ref.: #7515]	Country ISO 3 Code	CHN
[Ref.: #7515]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ504377 (>99% sequence identity) for Bacillus aidingensis subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	4
Animal Samples	15
Plant Samples
Total Samples	24

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7515]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7515]	Bacillus aidingensis strain 17-5 16S ribosomal RNA gene, complete sequence	DQ504377	1562	ENA	384933 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salibacterium aidingense DSM 18341	GCA_000429685	scaffold	GenBank	1121085 tax ID	*
[Ref.: #66792]	Bacillus aidingensis DSM 18341	1121085.3	wgs	PATRIC	1121085 tax ID	*
[Ref.: #66792]	Bacillus aidingensis DSM 18341	2522572065	draft	JGI IMG/M	1121085 tax ID	*

[Ref.: #7515]	GC-content	48.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31190]	GC-content	48.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus aidingensis DSM 18341 DSM 18341 NCBI: GCA_000429685.1
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus aidingensis DSM 18341 DSM 18341 NCBI: GCA_000429685.1
[Ref.: #69480]	motile	yes	90.707	yes
[Ref.: #69480]	flagellated	yes	69.317	no
[Ref.: #69480]	gram-positive	yes	90.451	yes
[Ref.: #69480]	anaerobic	no	98.934	no
[Ref.: #69480]	aerobic	yes	93.562	yes
[Ref.: #69480]	halophile	yes	92.948	yes
[Ref.: #69480]	spore-forming	yes	90.215	yes
[Ref.: #69480]	thermophile	no	97.067	yes
[Ref.: #69480]	glucose-util	yes	88.127	no
[Ref.: #69480]	glucose-ferment	no	87.634	no

Availability in culture collections External links

[Ref.: #7515]

Culture collection no.

DSM 18341, CGMCC 1.3227

[Ref.: #70938]

SI-ID 406887

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salibacterium halotolerans gen. nov., sp. nov., a bacterium isolated from a salt pan, reclassification of Bacillus qingdaonensis as Salibacterium qingdaonense comb. nov. and Bacillus halochares as Salibacterium halochares comb. nov.	Vishnuvardhan Reddy S, Thirumala M, Sasikala C, Venkata Ramana C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000572	2015	*
Phylogeny	Bacillus halochares sp. nov., a halophilic bacterium isolated from a solar saltern.	Pappa A, Sanchez-Porro C, Lazoura P, Kallimanis A, Perisynakis A, Ventosa A, Drainas C, Koukkou AI	Int J Syst Evol Microbiol	10.1099/ijs.0.014233-0	2009	*
Phylogeny	Bacillus aidingensis sp. nov., a moderately halophilic bacterium isolated from Ai-Ding salt lake in China.	Xue Y, Ventosa A, Wang X, Ren P, Zhou P, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000471-0	2008	*

References

#7515

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18341

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31190

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27517 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70938

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406887.1 )

#27517

IJSEM 2828 2008 ( DOI 10.1099/ijs.0.2008/000471-0 , PubMed 19060067 )

* These data were automatically processed and therefore are not curated

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Bacillus aidingensis DSM 18341 DSM 18341

Bacillus aidingensis DSM 18341 DSM 18341

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