Name: Solibacillus cecembensis PN5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1281

Type strain:

Species: Solibacillus cecembensis

Strain Designation: PN5

Culture col. no.: DSM 21993, JCM 15113, LMG 23935, MTCC 9127, CCUG 55698

Strain history: S. Shivaji PN5.

NCBI tax ID(s): 459347 (species)

SI-ID 293296

LMG 23935, JCM 15113

Section

Solibacillus cecembensis PN5 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Soil samples collected at an altitude of approximately 3500 m near the Pindari glacier.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Solibacillus*
	Species	**Solibacillus cecembensis**
	Full Scientific Name (LPSN)	Solibacillus cecembensis (Reddy et al. 2008) Gupta and Patel 2020

Synonym

Bacillus cecembensis

Information on morphological and physiological properties Morphology

[Ref.: #32450]	Gram stain	positive
[Ref.: #32450]	Cell length	3.5 µm
[Ref.: #32450]	Cell width	1.25 µm
[Ref.: #32450]	Cell shape	rod-shaped
[Ref.: #32450]	Motility	yes

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %96.599

[Ref.: #60697]

Incubation period

3 days

[Ref.: #32450]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32450]	growth	04-30 °C
[Ref.: #32450]	optimum	25 °C
[Ref.: #60697]	growth	30 °C
[Ref.: #67770]	growth	22 °C

[Ref.: #32450]	Temperature range	mesophilic
[Ref.: #60697]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32450]			optimum	06-08
[Ref.: #32450]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32450]	Oxygen tolerance	aerobe
[Ref.: #60697]	Oxygen tolerance	aerobe

[Ref.: #32450]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32450]		NaCl		growth	0-3	%
[Ref.: #32450]		NaCl		optimum	0-3	%

[Ref.: #32450]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32450]	citrate ChEBI	+	carbon source
[Ref.: #32450]	nitrate ChEBI	+	reduction
[Ref.: #32450]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32450]	acid phosphatase	+	3.1.3.2
[Ref.: #32450]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32450]	catalase	+	1.11.1.6
[Ref.: #32450]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16086]	Sample type/isolated from	Soil samples collected at an altitude of approximately 3500 m near the Pindari glacier
[Ref.: #16086]	Geographic location (country and/or sea, region)	Indian Himalayas
[Ref.: #16086]	Country	India
[Ref.: #16086]	Country ISO 3 Code	IND
[Ref.: #16086]	Continent	Asia

[Ref.: #60697]	Sample type/isolated from	Glacier
[Ref.: #60697]	Geographic location (country and/or sea, region)	Himalayan ranges,Pindari
[Ref.: #60697]	Country	India
[Ref.: #60697]	Country ISO 3 Code	IND
[Ref.: #60697]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at an altitude of approximately 3,500 m near the Pindari glacier of the Indian Himalayas
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM773821 (>99% sequence identity) for Bacillus cecembensis subclade from Microbeatlas

Aquatic Samples	108
Soil Samples	280
Animal Samples	229
Plant Samples	11
Total Samples	628

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16086]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16086]	Bacillus bhargavae 16S rRNA gene	AM773821	1517	ENA	459347 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Solibacillus cecembensis DSM 21993	GCA_001439635	scaffold	GenBank	459347 tax ID
[Ref.: #66792]	Bacillus cecembensis strain DSM 21993	459347.3	wgs	PATRIC	459347 tax ID	*
[Ref.: #66792]	Bacillus cecembensis DSM 21993	2744054488	draft	JGI IMG/M	459347 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Solibacillus cecembensis DSM 21993 NCBI: GCA_001439635.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus cecembensis strain DSM 21993 PATRIC: 459347.3
[Ref.: #69480]	gram-positive	yes	90.068	no
[Ref.: #69480]	anaerobic	no	97.803	no
[Ref.: #69480]	halophile	no	92.311	no
[Ref.: #69480]	spore-forming	yes	96.87	yes
[Ref.: #69480]	glucose-util	yes	84.922	no
[Ref.: #69480]	aerobic	yes	87.171	yes
[Ref.: #69480]	flagellated	yes	87.687	no
[Ref.: #69480]	motile	yes	92.886	no
[Ref.: #69480]	thermophile	no	99.675	no
[Ref.: #69480]	glucose-ferment	no	81.766	no

Availability in culture collections External links

[Ref.: #16086]

Culture collection no.

DSM 21993, JCM 15113, LMG 23935, MTCC 9127, CCUG 55698

[Ref.: #70935]

SI-ID 293296

References

#16086

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21993

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32450

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28672 (see below)

#60697 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55698

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70935

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293296.1 )

#28672

IJSEM 2330 2008 ( DOI 10.1099/ijs.0.65515-0 , PubMed 18842851 )

* These data were automatically processed and therefore are not curated

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Solibacillus cecembensis DSM 21993

Bacillus cecembensis strain DSM 21993

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