Name: Azotobacter chroococcum 43
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12736

Type strain:

Species: Azotobacter chroococcum

Strain Designation: 43

Culture col. no.: DSM 2286, ATCC 9043, VKM B-1616, CCUG 53675, LMG 8756, CECT 4103, IAM 12666, IAM 15040, JCM 20725, BCRC 10599, ICMP 15214, JCM 21503, NBRC 102613, NCAIM B.01391, NCIMB 11694, NRRL B-14346, NRRL B-14637

Strain history: IAM 12666 <-- ATCC 9043 <-- R. L. Starkey 43.

NCBI tax ID(s): 353 (species)

SI-ID 1078

LMG 8756, ATCC 9043, DSM 2286, NCIMB 11694, NCIB 11694, VKM B-1616, IAM12666, VKM B-1520, CCRC 10599, CECT 4103, NCAIM B.01391, BCRC 10599, IAM 15040, ICMP 15214, KACC 10900, NRRL B-14346, NRRL B-14637, CCUG 53675, JCM 21503, JCM 20725, NBRC 102613

Special Collections

Other strains from Azotobacter chroococcum

Section

Azotobacter chroococcum 43 is a Gram-negative bacterium of the family Pseudomonadaceae.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Azotobacter*
	Species	**Azotobacter chroococcum**
	Full Scientific Name (LPSN)	Azotobacter chroococcum Beijerinck 1901 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1019]

Culture medium

DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441)

[Ref.: #1019]

Culture medium growth

[Ref.: #1019]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1019]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1019]			growth	30 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1019]

Name of produced compound

L carnitine

[Ref.: #67770]

Observation

quinones: Q-9

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1019]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Azotobacter chroococcum small subunit ribosomal RNA gene, partial sequence	AF035211	959	GenBank ENA	353 tax ID	*
[Ref.: #20218]	Azotobacter chroococcum strain ICMP 15214 16S ribosomal RNA gene, partial sequence	EF100154	1371	GenBank ENA	353 tax ID	*
[Ref.: #20218]	UNVERIFIED_ORG: Azotobacter chroococcum 16S ribosomal RNA gene, partial sequence	AY353708	1383	GenBank ENA	353 tax ID	*
[Ref.: #20218]	Azotobacter chroococcum gene for 16S rRNA, partial sequence	AB175653	1430	GenBank ENA	353 tax ID	*
[Ref.: #20218]	Azotobacter chroococcum strain LMG 8756 16S ribosomal RNA gene, partial sequence	EU401906	1501	GenBank ENA	353 tax ID	*
[Ref.: #20218]	Azotobacter chroococcum gene for 16S rRNA, partial sequence, strain: NBRC 102613	AB681887	1461	GenBank ENA	353 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Azotobacter chroococcum ATCC 9043	GCA_004327905	scaffold	GenBank ENA	353 tax ID
[Ref.: #67770]	Azotobacter chroococcum DSM 2286	GCA_004339665	scaffold	GenBank ENA	353 tax ID
[Ref.: #66792]	Azotobacter chroococcum strain ATCC 9043	353.12	wgs	PATRIC	353 tax ID	*
[Ref.: #66792]	Azotobacter chroococcum strain DSM 2286	353.14	wgs	PATRIC	353 tax ID	*
[Ref.: #66792]	Azotobacter chroococcum DSM 2286	2802428852	draft	JGI IMG/M	353 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Azotobacter chroococcum strain ATCC 9043 PATRIC: 353.12
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.169	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.924	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.514	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.8	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	87.686	no

Availability in culture collections External links

[Ref.: #1019]

Culture collection no.

DSM 2286, ATCC 9043, VKM B-1616, CCUG 53675, LMG 8756, CECT 4103, IAM 12666, IAM 15040, JCM 20725, BCRC 10599, ICMP 15214, JCM 21503, NBRC 102613, NCAIM B.01391, NCIMB 11694, NRRL B-14346, NRRL B-14637

[Ref.: #81945]

SI-ID 1078

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of a novel endo-levanase from Azotobacter chroococcum DSM 2286 and its application for the production of prebiotic fructooligosaccharides.	Hovels M, Kosciow K, Deppenmeier U	Carbohydr Polym	10.1016/j.carbpol.2020.117384	2020	*
Phylogeny	Description of Azotobacter chroococcum subsp. isscasi subsp. nov. isolated from paddy soil and establishment of Azotobacter chroococcum subsp. chroococcum subsp. nov.	Jin H, Wang H, Zhang Y, Hu T, Lin Z, Liu B, Ma J, Wang X, Liu Q, Lin X, Xie Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004026	2020	*
Phylogeny	Azotobacter bryophylli sp. nov., isolated from the succulent plant Bryophyllum pinnatum.	Liu L, Yuan T, An Q, Yang M, Mao X, Mo C, Tan Z, Peng G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003412	2019	*
Metabolism	Effects of Mn2+ and Mg2+ on assimilation of NO3- and NH4+ by soil microorganisms.	McCarty GW, Bremner JM	Proc Natl Acad Sci U S A	10.1073/pnas.90.20.9403	1993	*
Enzymology	Detection of alternative nitrogenases in aerobic gram-negative nitrogen-fixing bacteria.	Fallik E, Chan YK, Robson RL	J Bacteriol	10.1128/jb.173.1.365-371.1991	1991	*

References

#1019

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2286

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81945

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1078.1 )

* These data were automatically processed and therefore are not curated

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Azotobacter chroococcum strain ATCC 9043

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