Azomonas macrocytogenes (CCUG 53671, CIP 103928, LMG 1266)

Name: Azomonas macrocytogenes (CCUG 53671, CIP 103928, LMG 1266)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12720

Type strain

Strain Designation 0

Culture col. no. CCUG 53671 CIP 103928 LMG 1266 CECT 4462 IAM 15003 6 more

NCBI tax ID(s) 69962

Special Collections DSMZ CCUG CIP

Links

Azomonas macrocytogenes 0 is a mesophilic prokaryote that was isolated from garden soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1016

LMG 1266,ATCC 12335,LMG 8755,NCIMB 8700,CIP 103928,NCIB 8700,CECT 4462,IAM 15003,NCAIM B.01790,ICMP 8674,NCIM 2896,CCUG 53671,DSM 721

@ref 20215

Last LPSN update 2025-12-16 09:49:55

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Azomonas

Species Azomonas macrocytogenes

Full scientific name Azomonas macrocytogenes (Jensen 1955) New and Tchan 1982

Synonyms (2)

Azomonotrichon macrocytogenes
Azotobacter macrocytogenes

BacDive ID	Other strains from **Azomonas macrocytogenes** (2)	Type strain
130855	A. macrocytogenes DSM 593, IMG 1619
12721	A. macrocytogenes 10 EM(M), DSM 722, NCIB 9129

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.9
125439		91.2
125438	negative	98.985

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
367	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
40875	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
367	DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441)	Medium recipe at MediaDive	Name: DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) Composition: Agar 14.881 g/l DL-Malate 1.98413 g/l D-Glucose 1.98413 g/l D-Mannitol 1.98413 g/l Na-pyruvate 0.992063 g/l Disodium succinate 0.992063 g/l K2HPO4 0.892857 g/l KH2PO4 0.0992065 g/l NaCl 0.0992065 g/l CaCl2 x 2 H2O 0.0992065 g/l MgSO4 x 7 H2O 0.0992065 g/l Yeast extract 0.0496032 g/l FeSO4 x 7 H2O 0.00992065 g/l MnSO4 x H2O 0.00496032 g/l NaVO3 x H2O 0.00496032 g/l Nicotinic acid 0.00248016 g/l Pyridoxine hydrochloride 0.00248016 g/l Calcium pantothenate 0.00248016 g/l Thiamine-HCl x 2 H2O 0.00248016 g/l H3BO3 0.000892857 g/l CoCl2 x 6 H2O 0.000595238 g/l Riboflavin 0.000496032 g/l ZnSO4 x 7 H2O 0.000297619 g/l MnCl2 x 4 H2O 8.92857e-05 g/l Na2MoO4 x 2 H2O 8.92857e-05 g/l NiCl2 x 6 H2O 5.95238e-05 g/l Vitamin B12 4.96032e-05 g/l CuCl2 x 2 H2O 2.97619e-05 g/l Folic acid 9.92063e-06 g/l Biotin 4.96032e-06 g/l Distilled water
367	AZOTOBACTER MEDIUM (DSMZ Medium 3)	Medium recipe at MediaDive	Name: AZOTOBACTER MEDIUM (DSMZ Medium 3) Composition: Agar 15.0 g/l CaCO3 5.0 g/l Glucose 5.0 g/l Mannitol 5.0 g/l K2HPO4 0.9 g/l KH2PO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.1 g/l FeSO4 x 7 H2O 0.01 g/l Na2MoO4 x 2 H2O 0.005 g/l Distilled water
120742	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
367	positive	growth	28	mesophilic
40875	positive	growth	26	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
367	garden soil	Denmark	DNK	Europe
59971	Soil,garden
120742	Environment, Soil	Denmark	DNK	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
367	1	Risk group (German classification) According to TRBA 466
120742	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419198v1 assembly for Azomonas macrocytogenes CECT 4462	scaffold	GCA_014191985	69962.3	2824346434	69962	60.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Azomonas macrocytogenes gene for 16S rRNA, partial sequence	AB175654	1442		69962

GC content

367

GC-content (mol%)59.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Azomonas macrocytogenes CECT 4462
NCBI: GCA_014191985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	91.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	63.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Azomonas macrocytogenes CECT 4462
NCBI: GCA_014191985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	no	89.14	no
125438	aerobic	aerobicⓘ	yes	72.68	no
125438	spore-forming	spore-formingⓘ	no	87.34	no
125438	thermophilic	thermophileⓘ	no	96.83	yes
125438	flagellated	motile2+ⓘ	yes	86.44	no

Literature

Title	Authors	Journal	DOI	Year
Distribution of alginate gene sequences in the Pseudomonas rRNA homology group I-Azomonas-Azotobacter lineage of superfamily B procaryotes.	Fialho AM, Zielinski NA, Fett WF, Chakrabarty AM, Berry A.	Appl Environ Microbiol	10.1128/aem.56.2.436-443.1990	1990

References

#367	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 721
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40875	; Curators of the CIP;
#59971	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53671
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#120742	Collection of Institut Pasteur ; Curators of the CIP; CIP 103928
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Azomonas macrocytogenes (CCUG 53671, CIP 103928, LMG 1266)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014191985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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