Tessaracoccus bendigoensis (DSM 12906, ACM 5119, JCM 13525)

Name: Tessaracoccus bendigoensis (DSM 12906, ACM 5119, JCM 13525)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12664

Type strain

Strain Designation KSBR1

Culture col. no. DSM 12906 ACM 5119 JCM 13525 Ben 106 KSBR1 2 more

NCBI tax ID(s) 1123357 72764

Special Collections DSMZ JCM

History <- A.M. Maszenan; KSBR1 (= Ben 106) DSM 12906 <-- A. M. Maszenan KSBR1 (=Ben 106).

Links

Tessaracoccus bendigoensis KSBR1 is a bacterium that was isolated from activated sludge.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49381

DSM 12906,ACM 5119,JCM 13525

@ref 20215

Last LPSN update 2026-02-09 11:20:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Propionibacteriaceae

Genus Tessaracoccus

Species Tessaracoccus bendigoensis

Full scientific name Tessaracoccus bendigoensis Maszenan et al. 1999

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93.5
125439		99.3	positive

Multimedia

@ref:	66793
multimedia content:	EM_DSM_12906_1.jpg
multimedia.multimedia content:	EM_DSM_12906_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12906_2.jpg
multimedia.multimedia content:	EM_DSM_12906_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12906_3.jpg
multimedia.multimedia content:	EM_DSM_12906_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12906_4.jpg
multimedia.multimedia content:	EM_DSM_12906_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12906_5.jpg
multimedia.multimedia content:	EM_DSM_12906_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4856	GLUCOSE SULFIDE MEDIUM (DSMZ Medium 851)		Medium recipe at MediaDive	Name: GLUCOSE SULFIDE MEDIUM (DSMZ Medium 851) Composition: Yeast extract 1.0 g/l (NH4)2SO4 0.5 g/l Na2S x 9 H2O 0.2 g/l Glucose 0.15 g/l Ca(NO3)2 0.1 g/l CaCO3 0.1 g/l KCl 0.05 g/l MgSO4 x 7 H2O 0.05 g/l K2HPO4 0.05 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4856	positive	growth	28
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.1

Murein

@ref	Murein short key	Type
4856	A42.01	A3gamma' LL-Dpm-Gly

Observation

67770

Observationquinones: MK-9(H₄), MK-7(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	aspartate and asparagine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	lipoate biosynthesis	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	heme metabolism	92.86	13 of 14
66794	metabolism of disaccharids	90.91	10 of 11
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	pyrimidine metabolism	82.22	37 of 45
66794	pentose phosphate pathway	81.82	9 of 11
66794	methylglyoxal degradation	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	myo-inositol biosynthesis	80	8 of 10
66794	vitamin K metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	alanine metabolism	79.31	23 of 29
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	76.6	72 of 94
66794	vitamin B12 metabolism	76.47	26 of 34
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	non-pathway related	68.42	26 of 38
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoleucine metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	oxidative phosphorylation	60.44	55 of 91
66794	cellulose degradation	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	tryptophan metabolism	55.26	21 of 38
66794	lipid metabolism	54.84	17 of 31
66794	methionine metabolism	53.85	14 of 26
66794	pantothenate biosynthesis	50	3 of 6
66794	grixazone biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	CMP-KDO biosynthesis	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	urea cycle	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	degradation of sugar acids	36	9 of 25
66794	tyrosine metabolism	35.71	5 of 14
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	chlorophyll metabolism	22.22	4 of 18
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4856	activated sludge	Australia, Victoria, Bendigo	Australia	AUS	Australia and Oceania
67770	Activated sludge biomass		Australia	AUS	Australia and Oceania

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4856	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2585427598 annotated assembly for Tessaracoccus bendigoensis DSM 12906	contig	GCA_900141915	1123357.3	2585427598	1123357	45.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4856	Tessaracoccus bendigoniensis 16S ribosomal RNA gene, partial sequence	AF038504	1465		72764

GC content

@ref	GC-content (mol%)	Method
4856	74	high performance liquid chromatography (HPLC)
67770	74	thermal denaturation, midpoint method (Tm)
67770	66.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tessaracoccus bendigoensis DSM 12906
NCBI: GCA_900141915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	motility	BacteriaNetⓘ	no	88.90	no
125439	spore_formation	BacteriaNetⓘ	no	51.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tessaracoccus bendigoensis DSM 12906
PATRIC: 1123357.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.49	no
125438	anaerobic	anaerobicⓘ	no	87.29	no
125438	spore-forming	spore-formingⓘ	no	71.06	no
125438	aerobic	aerobicⓘ	yes	61.46	no
125438	thermophilic	thermophileⓘ	no	96.13	no
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Enhanced solid-state biomethanisation of oil palm empty fruit bunches following fungal pretreatment	Suksong W, Wongfaed N, Sangsri B, Kongjan P, Prasertsan P, Podmirseg SM, Insam H, O-Thong S.	Industrial crops and products.		2020
	Synergistic integration of hydrothermal pretreatment and co-digestion for enhanced biogas production from empty fruit bunches in high solids anaerobic digestion.	Chanthong S, Kongjan P, Jariyaboon R, O-Thong S.	Heliyon	10.1016/j.heliyon.2024.e34817	2024
Metabolism	Structural and biochemical characterization of the Cutibacterium acnes exo-beta-1,4-mannosidase that targets the N-glycan core of host glycoproteins.	Reichenbach T, Kalyani D, Gandini R, Svartstrom O, Aspeborg H, Divne C.	PLoS One	10.1371/journal.pone.0204703	2018
	Evaluation of Pyrolysis Oil as Carbon Source for Fungal Fermentation.	Dorsam S, Kirchhoff J, Bigalke M, Dahmen N, Syldatk C, Ochsenreither K.	Front Microbiol	10.3389/fmicb.2016.02059	2016
Phylogeny	Actinomadura sediminis sp. nov., a marine actinomycete isolated from mangrove sediment.	He J, Xu Y, Sahu MK, Tian XP, Nie GX, Xie Q, Zhang S, Sivakumar K, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.032979-0	2012
	Tessaracoccus caeni sp. nov., a novel member of Propionibacteriaceae isolated from activated sludge in Hefei, PR China.	Wang J, Chen H, Wang X, Wang S, Jiao D, Yuan S, Dai J, Liu Y, Li Y, Li S, Qiu D.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006113	2023
Phylogeny	Tessaracoccus lubricantis sp. nov., isolated from a metalworking fluid.	Kampfer P, Lodders N, Warfolomeow I, Busse HJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.006841-0	2009
Phylogeny	Tessaracoccus arenae sp. nov., isolated from sea sand.	Thongphrom C, Kim JH, Bora N, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001907	2017
Phylogeny	Tessaracoccus lapidicaptus sp. nov., an actinobacterium isolated from the deep subsurface of the Iberian pyrite belt.	Puente-Sanchez F, Sanchez-Roman M, Amils R, Parro V	Int J Syst Evol Microbiol	10.1099/ijs.0.060038-0	2014
Phylogeny	Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil.	Cai M, Wang L, Cai H, Li Y, Wang YN, Tang YQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.025932-0	2010
Phylogeny	Tessaracoccus bendigoensis gen. nov., sp. nov., a gram-positive coccus occurring in regular packages or tetrads, isolated from activated sludge biomass.	Maszenan AM, Seviour RJ, Patel BK, Schumann P, Rees GN	Int J Syst Bacteriol	10.1099/00207713-49-2-459	1999

References

#4856	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12906
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tessaracoccus bendigoensis (DSM 12906, ACM 5119, JCM 13525)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900141915

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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