Propioniferax innocua L60 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from human skin.
Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Propionibacteriales |
| Family Propionibacteriaceae |
| Genus Propioniferax |
| Species Propioniferax innocua |
| Full scientific name Propioniferax innocua (Pitcher and Collins 1992) Yokota et al. 1994 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3219 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 20203 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 20203 | 5006 | Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes | |||
| 20203 | 5425 | Name: Brain Heart Infusion (BHI) Agar; 5425 Composition: Calf brain infusion 200.0 g/l Beef heart infusion 250.0 g/l Casein (meat) peptone 10.0 g/l Glucose 2.0 g/l NaCl 5.0 g/l Na2HPO4 2.5 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.4 Usage: Maintenance and revitalization Organisms: Dermatophilus congolensis, Nocardia brasieliensis, N. asteroides, Rhodococcus equi, R. fascians, R. rhodochrous, Streptomyces thermoviol aceus subsp. apingens, Coryneform species | |||
| 20203 | 5428 | ||||
| 20203 | 5530 | ||||
| 40598 | MEDIUM 719 - for - Propioniferax | ||||
| 120131 | CIP Medium 719 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 3219 | A41.01 | A3gamma LL-Dpm-Gly |
| 67770 | Observationquinones: MK-9(H4) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68379 | 17634 ChEBI | D-glucose | + | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 120131 | 17632 ChEBI | nitrate | + | reduction | |
| 68380 | 17632 ChEBI | nitrate | + | reduction | from API rID32A |
| 120131 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 120131 | catalase | + | 1.11.1.6 | |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | + | from API rID32A | |
| 68380 | histidine arylamidase | + | from API rID32A | |
| 68380 | L-arginine arylamidase | + | from API rID32A | |
| 68380 | leucine arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 | from API rID32A |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 120131 | oxidase | + | ||
| 68380 | phenylalanine arylamidase | + | from API rID32A | |
| 68380 | proline-arylamidase | + | 3.4.11.5 | from API rID32A |
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68380 | serine arylamidase | + | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68380 | tyrosine arylamidase | + | from API rID32A | |
| 120131 | urease | - | 3.5.1.5 | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | starch degradation | 90 | 9 of 10 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | alanine metabolism | 86.21 | 25 of 29 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | vitamin B12 metabolism | 79.41 | 27 of 34 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 78.57 | 22 of 28 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | leucine metabolism | 76.92 | 10 of 13 | ||
| 66794 | pyrimidine metabolism | 75.56 | 34 of 45 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | ||
| 66794 | NAD metabolism | 72.22 | 13 of 18 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | purine metabolism | 71.28 | 67 of 94 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | phenol degradation | 70 | 14 of 20 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | 3-phenylpropionate degradation | 66.67 | 10 of 15 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | tryptophan metabolism | 65.79 | 25 of 38 | ||
| 66794 | methionine metabolism | 65.38 | 17 of 26 | ||
| 66794 | oxidative phosphorylation | 64.84 | 59 of 91 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | gluconeogenesis | 62.5 | 5 of 8 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | lysine metabolism | 57.14 | 24 of 42 | ||
| 66794 | tetrahydrofolate metabolism | 57.14 | 8 of 14 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | ||
| 66794 | aspartate and asparagine metabolism | 55.56 | 5 of 9 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | arginine metabolism | 54.17 | 13 of 24 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | isoprenoid biosynthesis | 53.85 | 14 of 26 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | Entner Doudoroff pathway | 50 | 5 of 10 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | vitamin B6 metabolism | 45.45 | 5 of 11 | ||
| 66794 | 4-hydroxymandelate degradation | 44.44 | 4 of 9 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 42.86 | 3 of 7 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | factor 420 biosynthesis | 40 | 2 of 5 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | degradation of sugar alcohols | 37.5 | 6 of 16 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 35.29 | 6 of 17 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | sulfate reduction | 23.08 | 3 of 13 | ||
| 66794 | arachidonic acid metabolism | 22.22 | 4 of 18 | ||
| 66794 | chlorophyll metabolism | 22.22 | 4 of 18 | ||
| 66794 | polyamine pathway | 21.74 | 5 of 23 |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 51542 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20203 | not determinedn.d. | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - | |
| 51542 | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | |
| 120131 | - | + | + | + | - | + | + | + | + | - | + | + | - | - | - | + | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM671623v1 assembly for Propioniferax innocua DSM 8251 | contig | 1753 | 75.87 | ||||
| 124043 | ASM3952891v1 assembly for Propioniferax innocua JCM 13395 | scaffold | 1753 | 67.22 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Propioniferax innocua 16S ribosomal RNA gene, partial sequence | AF227165 | 1465 | 1753 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 68.70 | no |
| 125439 | motility | BacteriaNetⓘ | no | 86.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 97.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 94.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.42 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.20 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 72.75 | no |
| 125438 | aerobic | aerobicⓘ | yes | 79.17 | no |
| 125438 | thermophilic | thermophileⓘ | no | 88.60 | no |
| 125438 | flagellated | motile2+ⓘ | no | 93.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Probiotic Adhesion to Skin Keratinocytes and Underlying Mechanisms. | Lizardo M, Magalhaes RM, Tavaria FK. | Biology (Basel) | 10.3390/biology11091372 | 2022 | ||
| Cannabidiol and Cannabigerol Exert Antimicrobial Activity without Compromising Skin Microbiota. | Luz-Veiga M, Amorim M, Pinto-Ribeiro I, Oliveira ALS, Silva S, Pimentel LL, Rodriguez-Alcala LM, Madureira R, Pintado M, Azevedo-Silva J, Fernandes J. | Int J Mol Sci | 10.3390/ijms24032389 | 2023 | ||
| Phylogeny | Bacterial diversity and function of aerobic granules engineered in a sequencing batch reactor for phenol degradation. | Jiang HL, Tay JH, Maszenan AM, Tay ST. | Appl Environ Microbiol | 10.1128/aem.70.11.6767-6775.2004 | 2004 | |
| Phylogeny | Phylogenetic analysis of some LL-diaminopimelic acid-containing coryneform bacteria from human skin: description of Propionibacterium innocuum sp. nov. | Pitcher DG, Collins MD | FEMS Microbiol Lett | 10.1016/0378-1097(91)90372-h | 1991 |
| #3219 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8251 |
| #20203 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40598 | ; Curators of the CIP; |
| #51542 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33480 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68379 | Automatically annotated from API Coryne . |
| #68380 | Automatically annotated from API rID32A . |
| #68382 | Automatically annotated from API zym . |
| #120131 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110011 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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