Name: Propionibacterium freudenreichii E11.1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12643

Type strain:

Species: Propionibacterium freudenreichii

Strain Designation: E11.1

Culture col. no.: DSM 4902, ATCC 9614, NCDO 853, NCIB 8099, CCUG 36819, VPI 0405, CIP 103027, NCIMB 8099

Strain history: CIP <- 1987, NCIB <- 1950, ATCC <- R. J. Williams: strain E11.1, Propionibacterium shermanii <- C. B. van Niel: strain VPI 0405

NCBI tax ID(s): 1752 (subspecies)

SI-ID 8663

LMG 16424, ATCC 9614, CCUG 36819, LMG 17740, NCFB 853, NCIMB 8099, NCDO 853, NCIB 8099, CIP 103027, CECT 875, CGMCC 1.2231, DSM 4902

Special Collections

Other strains from Propionibacterium freudenreichii

Section

Propionibacterium freudenreichii E11.1 is an anaerobe, Gram-positive bacterium of the family Propionibacteriaceae.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Propionibacterium*
	Species	**Propionibacterium freudenreichii**
	Full Scientific Name (LPSN)	Propionibacterium freudenreichii van Niel 1928 (Approved Lists 1980)

	Synonym	"Propionibacterium* shermanii"*
	Synonym	Propionibacterium freudenreichii subsp. shermanii

Information on morphological and physiological properties Morphology

[Ref.: #119456]	Gram stain	positive

[Ref.: #119456]	Cell shape	rod-shaped

[Ref.: #119456]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1869]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #1869]

Culture medium growth

[Ref.: #1869]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1869]

Culture medium composition

expand / minimize

[Ref.: #41657]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41657]

Culture medium growth

[Ref.: #41657]

Culture medium composition

expand / minimize

[Ref.: #119456]

Culture medium

CIP Medium 20

[Ref.: #119456]

Culture medium growth

[Ref.: #119456]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1869]	growth	30 °C
[Ref.: #41657]	growth	37 °C
[Ref.: #53417]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1869]	Oxygen tolerance	anaerobe
[Ref.: #53417]	Oxygen tolerance	anaerobe
[Ref.: #119456]	Oxygen tolerance	anaerobe

[Ref.: #1869]	Murein short key	A31
[Ref.: #1869]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #119456]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #119456]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #119456]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #119456]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A, API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119456]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #119456]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #53417]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	44.9	14.711
C17:0 anteiso	9.6	16.722
C16:0	5.8	16
C17:0	5.4	17
C17:1 ISO I/C16:0 DMA	4.8	16.481
C17:0 ANTEISO DMA	4.8	17.195
C15:0	3.8	15
C15:0 ISO	3.3	14.621
C18:1 ISO H	2.7	17.46
C18:2 ω6,9c/C18:0 ANTE	2.5	17.724
C14:0 2OH	2.1	15.205
C16:0 iso	1.3	15.626
C18:1 ω9c	1.2	17.769
C14:0 3OH/C16:1 ISO I	1.2	15.485
C17:0 iso	1.1	16.629
Unidentified	0.9	15.683
Unidentified	0.8	14.953
Unidentified	0.8	17.105
C18:0	0.7	18
C14:0	0.7	14
C14:0 ISO 3OH	0.4	15.117
C14:0 ISO	0.4	13.618
Unidentified	0.4	16.108
C13:0 3OH/C15:1 i I/H	0.3	14.469

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #1869]	12565	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+/-	+	+	-	+
[Ref.: #1869]	12564	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	-	+
[Ref.: #1869]	12563	-	-	-	+	-	+	-	-	-	-	+/-	-	-	-	-	-	-	+/-	+	-	+	+	-	+	-	-	+	-	+
[Ref.: #1869]	12562	-	-	-	+	-	+	-	-	-	-	+/-	-	-	-	-	-	-	+/-	+	-	+	+	-	+	-	+/-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119456]	7320	-	-	+	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence Y10819 (>99% sequence identity) for Propionibacterium freudenreichii subclade from Microbeatlas

Aquatic Samples	4110
Soil Samples	2003
Animal Samples	15016
Plant Samples	396
Total Samples	21525

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1869]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119456]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1869]	P. freudenreichii subsp. shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus ITS	Y10819	5116	GenBank ENA	1744 tax ID
[Ref.: #1869]	Propionibacterium freudenreichii subsp. shermanii strain CIP 103027 16S ribosomal RNA gene, partial sequence	AY883041	459	GenBank ENA	1752 tax ID
[Ref.: #20218]	Propionibacterium freudenreichii subsp. shermanii 16S-23S ribosomal RNA intergenic spacer region, complete sequence	AF218434	338	GenBank ENA	1752 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS9	1744.123	complete	PATRIC	1744 tax ID	*
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS11	1744.109	complete	PATRIC	1744 tax ID	*
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS12	1744.108	complete	PATRIC	1744 tax ID	*
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS12-1	1744.105	complete	PATRIC	1744 tax ID	*
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS12-3	1744.142	complete	PATRIC	1744 tax ID	*
[Ref.: #66792]	Propionibacterium freudenreichii strain PFRJS13	1744.117	complete	PATRIC	1744 tax ID	*

[Ref.: #1869]

GC-content

65.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Propionibacterium freudenreichii strain PFRJS-23 PATRIC: 1744.122
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.647	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	62.505	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.557	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	67.806	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.784	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	no

Availability in culture collections External links

[Ref.: #1869]

Culture collection no.

DSM 4902, ATCC 9614, NCDO 853, NCIB 8099, CCUG 36819, VPI 0405, CIP 103027, NCIMB 8099

[Ref.: #81856]

SI-ID 8663

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mechanism of conjugated linoleic acid and vaccenic acid formation in human faecal suspensions and pure cultures of intestinal bacteria.	McIntosh FM, Shingfield KJ, Devillard E, Russell WR, Wallace RJ	Microbiology (Reading)	10.1099/mic.0.022921-0	2009	*
Genetics	In silico exploration of the fructose-6-phosphate phosphorylation step in glycolysis: genomic evidence of the coexistence of an atypical ATP-dependent along with a PPi-dependent phosphofructokinase in Propionibacterium freudenreichii subsp. shermanii.	Meurice G, Deborde C, Jacob D, Falentin H, Boyaval P, Dimova D	In Silico Biol	2004040043	2004	*
Enzymology	Isolation and characterization of proline iminopeptidase from Propionibacterium freudenreichii ATCC 9614.	Stepaniak L	Nahrung	10.1002/(SICI)1521-3803(20000301)44:2<102::AID-FOOD102>3.0.CO;2-Z	2000	*
Phylogeny	Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR.	Kaufmann P, Pfefferkorn A, Teuber M, Meile L	Appl Environ Microbiol	10.1128/aem.63.4.1268-1273.1997	1997	*
Enzymology	Properties of Alanine Dehydrogenase and Aspartase from Propionibacterium freudenreichii subsp. shermanii.	Crow VL	Appl Environ Microbiol	10.1128/aem.53.8.1885-1892.1987	1987	*
	Utilization of Lactate Isomers by Propionibacterium freudenreichii subsp. shermanii: Regulatory Role for Intracellular Pyruvate.	Crow VL	Appl Environ Microbiol	10.1128/aem.52.2.352-358.1986	1986	*

References

#1869

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4902

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41657 ; Curators of the CIP;
#53417 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36819

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81856

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8663.1 )

#119456 Collection of Institut Pasteur ; Curators of the CIP; CIP 103027
* These data were automatically processed and therefore are not curated

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Propionibacterium freudenreichii strain PFRJS-23

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