Name: Cellulosimicrobium funkei C8821
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12581

Type strain:

Species: Cellulosimicrobium funkei

Strain Designation: C8821, W6122

Culture col. no.: DSM 16025, ATCC BAA 886, CCUG 50705, JCM 14302, CIP 108915, NBRC 104118, VTT E-072700

Strain history: DSM 16025 <-- J. M. Brown W6122 <-- Univ. of Colorado, USA.

NCBI tax ID(s): 1349761 (strain), 264251 (species)

Other strains from Cellulosimicrobium funkei

C. funkei CIP 101288
C. funkei CIP 101208
C. funkei CIP 101186
C. funkei CIP 101185
C. funkei CIP 102520
C. funkei CIP 102521
C. funkei CIP 102522
C. funkei CCUG 59260
C. funkei JCM 32432, KCTC 39527, LMG 28646, ...

Section

Cellulosimicrobium funkei C8821 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from blood, endocarditis patient.

Gram-positive
motile
rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Cellulosimicrobium*
	Species	**Cellulosimicrobium funkei**
	Full Scientific Name (PNU)	Cellulosimicrobium funkei Brown et al. 2006

Synonym

Cellulosimicrobium aquatile

Information on morphological and physiological properties Morphology

[Ref.: #31606]	Gram stain	positive
[Ref.: #31606]	Cell length	1 µm
[Ref.: #31606]	Cell width	1 µm
[Ref.: #31606]	Cell shape	rod-shaped
[Ref.: #31606]	Motility	yes

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19738]	Colony color	Zinc yellow (1018)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 2

[Ref.: #19738]	Colony color	Zinc yellow (1018)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 3

[Ref.: #19738]	Colony color	Zinc yellow (1018)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 4

[Ref.: #19738]	Colony color	Zinc yellow (1018)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 5

[Ref.: #19738]	Colony color	Beige (1001)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 6

[Ref.: #19738]	Colony color	Zinc yellow (1018)
[Ref.: #19738]	Incubation period	10-14 days
[Ref.: #19738]	Cultivation medium used	ISP 7

[Ref.: #31606]

Pigment production

yes

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 2

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 3

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 4

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 5

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 6

[Ref.: #19738]	Multicellular complex forming ability	no
[Ref.: #19738]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6147]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6147]

Culture medium growth

[Ref.: #6147]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #6147]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 2

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 3

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 4

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 5

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 6

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #19738]

Culture medium

ISP 7

[Ref.: #19738]

Culture medium growth

[Ref.: #19738]

Culture medium composition

expand / minimize

[Ref.: #34976]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34976]

Culture medium growth

[Ref.: #34976]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #6147]		growth	28 °C
[Ref.: #19738]		optimum	28 °C
[Ref.: #31606]		growth	30-35 °C
[Ref.: #31606]	no	growth	25 °C
[Ref.: #34976]		growth	37 °C
[Ref.: #58951]		growth	22-42 °C
[Ref.: #67770]		growth	28 °C

[Ref.: #6147]	Temperature range	mesophilic
[Ref.: #19738]	Temperature range	mesophilic
[Ref.: #31606]	Temperature range	mesophilic
[Ref.: #34976]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31606]			optimum	7
[Ref.: #31606]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31606]	Oxygen tolerance	aerobe
[Ref.: #58951]	Oxygen tolerance	aerobe

[Ref.: #31606]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %95

[Ref.: #31606]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31606]	arabinose ChEBI	+	carbon source
[Ref.: #31606]	cellobiose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31606]	fructose ChEBI	+	carbon source
[Ref.: #31606]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31606]	glucose ChEBI	+	carbon source
[Ref.: #31606]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #31606]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31606]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #31606]	mannose ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #31606]	salicin ChEBI	+	carbon source
[Ref.: #31606]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #31606]	trehalose ChEBI	+	carbon source
[Ref.: #31606]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #31606]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19738]	282	+	+	+	+	-	+	+	+	+	+/-	+	not determinedn.d.	+	-	+	-	+	-	+	+	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19738]	562	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6147]	Sample type/isolated from	blood, endocarditis patient
[Ref.: #6147]	Geographic location (country and/or sea, region)	Colorado
[Ref.: #6147]	Country	USA
[Ref.: #6147]	Country ISO 3 Code	USA
[Ref.: #6147]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Blood of an endocarditis patient
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY501364 (>99% sequence identity) for Cellulosimicrobium from Microbeatlas

Aquatic Samples	417
Soil Samples	1873
Animal Samples	1680
Plant Samples	1505
Total Samples	5475

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6147]	Pathogenicity (human)	yes, in single cases
[Ref.: #6147]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19738]	Biosafety level	2	Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6147]	Cellulosimicrobium funkei strain W6122 16S small subunit ribosomal RNA gene, partial sequence	AY501364	1444	ENA	264251 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulosimicrobium funkei NBRC 104118 NBRC 104118	GCA_001570825	contig	GenBank	1349761 tax ID
[Ref.: #67770]	Cellulosimicrobium funkei JCM 14302	GCA_004519295	contig	GenBank	264251 tax ID
[Ref.: #66792]	Cellulosimicrobium funkei NBRC 104118	1349761.3	wgs	PATRIC	1349761 tax ID	*
[Ref.: #66792]	Cellulosimicrobium funkei strain JCM 14302	264251.7	wgs	PATRIC	264251 tax ID	*
[Ref.: #66792]	Cellulosimicrobium funkei NBRC 104118	2731957606	draft	JGI IMG/M	1349761 tax ID	*

[Ref.: #6147]	GC-content	74.5 mol%
[Ref.: #67770]	GC-content	74.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulosimicrobium funkei strain JCM 14302 PATRIC: 264251.5
[Ref.: #69480]	anaerobic	no	99.646	no
[Ref.: #69480]	spore-forming	no	89.743	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	no	99.736	yes
[Ref.: #69480]	motile	no	81.467	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulosimicrobium funkei strain JCM 14302 PATRIC: 264251.5
[Ref.: #69481]	spore-forming	no	95	no

Availability in culture collections External links

[Ref.: #6147]

Culture collection no.

DSM 16025, ATCC BAA 886, CCUG 50705, JCM 14302, CIP 108915, NBRC 104118, VTT E-072700

[Ref.: #20218]

Associated Passport(s) in StrainInfo

532123, 377212, 532120

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis.	Le Han H, Nguyen TTH, Li Z, Shin NR, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005296	2022	*
Phylogeny	Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.	Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0588-y	2015	*
Phylogeny	Characterization of clinical isolates previously identified as Oerskovia turbata: proposal of Cellulosimicrobium funkei sp. nov. and emended description of the genus Cellulosimicrobium.	Brown JM, Steigerwalt AG, Morey RE, Daneshvar MI, Romero LJ, McNeil MM	Int J Syst Evol Microbiol	10.1099/ijs.0.63882-0	2006	*

References

#6147

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16025

#19738

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31606

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27894 (see below)

#34976 ; Curators of the CIP;
#58951 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50705

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27894

IJSEM 801 2006 ( DOI 10.1099/ijs.0.63882-0 , PubMed 16585698 )

* These data were automatically processed and therefore are not curated

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Cellulosimicrobium funkei strain JCM 14302

Cellulosimicrobium funkei strain JCM 14302

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