Rossellomorea vietnamensis (DSM 18898, CIP 108672, HSCC 1663)

Name: Rossellomorea vietnamensis (DSM 18898, CIP 108672, HSCC 1663)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1258

Type strain

Strain Designation 15-1

Culture col. no. DSM 18898 CIP 108672 HSCC 1663 JCM 11124 NRIC 0531 5 more

NCBI tax ID(s) 1349757 218284

Special Collections DSMZ JCM CIP Literature strains

History <- CIP <- JCM <- O. Shida, HSCC, Chiba <- K. Mura; 15-1 HSCC 1663 <-- K. Mura 15-1. CIP <- 2005, JCM <- 2001, O. Shida, HSCC, Chiba, Japan <- K. Mura: strain 15-1

Links

Rossellomorea vietnamensis 15-1 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from vietnamese fish sauce.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134413

JCM 11124,NRRL B-23890,CIP 108672,NBRC 101237,DSM 18898,LMG 24742

@ref 20215

Last LPSN update 2026-02-09 11:18:04

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Rossellomorea

Species Rossellomorea vietnamensis

Full scientific name Rossellomorea vietnamensis (Noguchi et al. 2004) Gupta et al. 2020

Synonyms (1)

Bacillus vietnamensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30062	positive	2.5 µm	0.75 µm	rod-shaped
123837	positive			rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7764	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38287	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123837	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7764	positive	growth	30
30062	positive	growth	10-40
30062	positive	optimum	35
38287	positive	growth	30
67770	positive	growth	30
123837	positive	growth	10-45
123837	negative	growth	55

Culture pH

@ref	Ability	Type	PH	PH range
30062	positive	optimum	8.25
30062	positive	growth	6.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30062	aerobe
123837	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
30062
123837
125438		94.914

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30062	NaCl	positive	growth	0-15 %
30062	NaCl	positive	optimum	1 %
123837	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123837	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123837	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
30062	5291 ChEBI	gelatin	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
30062	24265 ChEBI	gluconate	+	carbon source
30062	17234 ChEBI	glucose	+	carbon source
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
123837	606565 ChEBI	hippurate	+	hydrolysis
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
30062	25115 ChEBI	malate	+	carbon source
30062	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
30062	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
123837	17632 ChEBI	nitrate	-	reduction
123837	17632 ChEBI	nitrate	-	respiration
123837	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123837	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123837	15688 ChEBI	acetoin	-
123837	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123837	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123837	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
123837	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123837	caseinase	+	3.4.21.50
30062	catalase	+	1.11.1.6
123837	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
30062	cytochrome oxidase	+	1.9.3.1
123837	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123837	gamma-glutamyltransferase	+	2.3.2.2
123837	gelatinase	+
123837	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123837	lipase	+
68382	lipase (C 14)	-		from API zym
123837	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123837	ornithine decarboxylase	+	4.1.1.17
123837	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
123837	tween esterase	-
123837	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	aerobactin biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	palmitate biosynthesis	100	22 of 22
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	lipoate biosynthesis	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	alanine metabolism	89.66	26 of 29
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	pyrimidine metabolism	86.67	39 of 45
66794	heme metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	Entner Doudoroff pathway	80	8 of 10
66794	vitamin K metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	methionine metabolism	76.92	20 of 26
66794	phenylalanine metabolism	76.92	10 of 13
66794	ppGpp biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	lipid metabolism	67.74	21 of 31
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	glutathione metabolism	64.29	9 of 14
66794	oxidative phosphorylation	63.74	58 of 91
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	tryptophan metabolism	60.53	23 of 38
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	d-xylose degradation	54.55	6 of 11
66794	lysine metabolism	52.38	22 of 42
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	ginsenoside metabolism	50	8 of 16
66794	myo-inositol biosynthesis	50	5 of 10
66794	isoprenoid biosynthesis	50	13 of 26
66794	ethanol fermentation	50	1 of 2
66794	degradation of sugar acids	48	12 of 25
66794	sulfate reduction	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	chlorophyll metabolism	38.89	7 of 18
66794	carotenoid biosynthesis	36.36	8 of 22
66794	metabolism of disaccharids	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	phenol degradation	35	7 of 20
66794	polyamine pathway	34.78	8 of 23
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	arachidonic acid metabolism	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	nitrate assimilation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	vitamin B12 metabolism	23.53	8 of 34
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123837	-	+	+	+	-	+	-	+	+	+	+	+	-	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123837	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	-	+	+	-	-	-	-	-	+/-	-	-	+/-	+/-	+/-	+/-	-	+/-	+/-	+	-	-	+	+	+/-	-	+/-	+	+	-	-	+/-	-	-	-	-	-	-	+/-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123837	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	-	-	+	-	+	-	+	-	-	-	-	-	+	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7764	vietnamese fish sauce	Japan	JPN	Asia
67770	Vietnamese fish sauce
123837	Food, Fish, sauce	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB099708 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	996
Soil Samples	945
Animal Samples	294
Plant Samples	97
Total Samples	2332

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7764	1	Risk group (German classification) According to TRBA 466
123837	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM159182v1 assembly for Rossellomorea vietnamensis NBRC 101237	contig	GCA_001591825	1349757.3	2731957668	1349757	53.91

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7764	Bacillus vietnamensis gene for 16S ribosomal RNA, partial sequence	AB099708	1388	218284
124043	Bacillus vietnamensis gene for 16S rRNA, partial sequence, strain: NBRC 101237.	AB681418	1284	218284
124043	Bacillus vietnamensis NBRC 101237 partial 16S rRNA gene, strain JC509	LT962551	1059	1349757

GC content

@ref	GC-content (mol%)	Method
7764	43
30062	43.5
67770	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rossellomorea vietnamensis NBRC 101237
NCBI: GCA_001591825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.40	no
125439	motility	BacteriaNetⓘ	yes	82.80	no
125439	gram_stain	BacteriaNetⓘ	variable	84.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	77.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus vietnamensis NBRC 101237
PATRIC: 1349757.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.67	yes
125438	anaerobic	anaerobicⓘ	no	91.13	yes
125438	spore-forming	spore-formingⓘ	yes	94.91	yes
125438	aerobic	aerobicⓘ	yes	81.64	yes
125438	thermophilic	thermophileⓘ	no	93.23	no
125438	flagellated	motile2+ⓘ	yes	85.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Draft genome sequences of three xerophilic Aspergillus section Restricti species isolated from house dust in Japan.	Hagiuda R, Hirose D.	Microbiol Resour Announc	10.1128/mra.00889-24	2025
	Pigment Formation by Monascus pilosus DBM 4361 in Submerged Liquid Culture.	Husakova M, Bezdicek M, Branska B, Sedlar K, Patakova P.	J Agric Food Chem	10.1021/acs.jafc.5c08401	2025
	l-Phenylalanine supplementation increases the production of phenylalanine ammonia-lyase and methyl cinnamate in the mycelia of Tricholoma matsutake	Tasaki Y, Hayashi S, Kato M.	Mycoscience	10.1016/j.myc.2017.07.001	2018
	Identification of the oosporein biosynthesis gene cluster in an entomopathogenic fungus Blackwellomyces cardinalis.	Nakamura Y, Nguyen NH, Yoshinari T, Hachisu M, Nguyen PT, Shimizu K.	Mycoscience	10.47371/mycosci.2024.02.005	2024
Metabolism	Characterization and gene cloning of l-xylulose reductase involved in l-arabinose catabolism from the pentose-fermenting fungus Rhizomucor pusillus.	Yamasaki-Yashiki S, Komeda H, Hoshino K, Asano Y.	Biosci Biotechnol Biochem	10.1080/09168451.2017.1320518	2017
	Structure and expression of two phenylalanine ammonia-lyase genes of the basidiomycete mushroom Tricholoma matsutake	Tasaki Y, Miyakawa H.	Mycoscience	10.1016/j.myc.2015.03.001	2015
	The Impact of Heterologous Regulatory Genes from Lipodepsipeptide Biosynthetic Gene Clusters on the Production of Teicoplanin and A40926.	Zhukrovska K, Binda E, Fedorenko V, Marinelli F, Yushchuk O.	Antibiotics (Basel)	10.3390/antibiotics13020115	2024
Metabolism	Identification and characterization of D-xylose reductase involved in pentose catabolism of the zygomycetous fungus Rhizomucor pusillus.	Komeda H, Yamasaki-Yashiki S, Hoshino K, Asano Y.	J Biosci Bioeng	10.1016/j.jbiosc.2014.06.012	2015
	An overview of the two-component system GarR/GarS role on antibiotic production in Streptomyces coelicolor.	Cruz-Bautista R, Zelarayan-Aguero A, Ruiz-Villafan B, Escalante-Lozada A, Rodriguez-Sanoja R, Sanchez S.	Appl Microbiol Biotechnol	10.1007/s00253-024-13136-z	2024
	Draft Genome Sequences of the Xylose-Fermenting Yeast Scheffersomyces shehatae NBRC 1983^T and a Thermotolerant Isolate of S. shehatae ATY839 (JCM 18690).	Okada N, Tanimura A, Hirakawa H, Takashima M, Ogawa J, Shima J.	Genome Announc	10.1128/genomea.00347-17	2017
Metabolism	Unique Physiological and Genetic Features of Ofloxacin-Resistant Streptomyces Mutants.	Hoshino K, Hamauzu R, Nakagawa H, Kodani S, Hosaka T.	Appl Environ Microbiol	10.1128/aem.02327-21	2022
	Optimization of D-lactic acid production using unutilized biomass as substrates by multiple parallel fermentation.	Mufidah E, Wakayama M.	3 Biotech	10.1007/s13205-016-0499-2	2016
	Unveiling Concealed Functions of Endosymbiotic Bacteria Harbored in the Ascomycete Stachylidium bicolor.	Almeida C, Silva Pereira C, Gonzalez-Menendez V, Bills G, Pascual J, Sanchez-Hidalgo M, Kehraus S, Genilloud O.	Appl Environ Microbiol	10.1128/aem.00660-18	2018
Metabolism	Biofuel Production Based on Carbohydrates from Both Brown and Red Macroalgae: Recent Developments in Key Biotechnologies.	Kawai S, Murata K.	Int J Mol Sci	10.3390/ijms17020145	2016
Phylogeny	Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc.	Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W.	Antonie Van Leeuwenhoek	10.1007/s10482-015-0478-3	2015
Enzymology	Rummeliibacillus suwonensis sp. nov., isolated from soil collected in a mountain area of South Korea.	Her J, Kim J.	J Microbiol	10.1007/s12275-013-3126-5	2013
Phylogeny	Acrocarpospora phusangensis sp. nov., isolated from a temperate peat swamp forest soil.	Niemhom N, Suriyachadkun C, Tamura T, Thawai C.	Int J Syst Evol Microbiol	10.1099/ijs.0.046227-0	2013
	Streptomyces antimicrobicus sp. nov., a novel clay soil-derived actinobacterium producing antimicrobials against drug-resistant bacteria.	Chanama M, Suriyachadkun C, Chanama S.	PLoS One	10.1371/journal.pone.0286365	2023
Phylogeny	Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov.	Majumdar S, Prabhagaran SR, Shivaji S, Lal R.	Int J Syst Evol Microbiol	10.1099/ijs.0.63766-0	2006
Phylogeny	Rossellomorea arthrocnemi sp. nov., a novel plant growth-promoting bacterium used in heavy metal polluted soils as a phytoremediation tool.	Navarro-Torre S, Carro L, Igual JM, Montero-Calasanz MDC	Int J Syst Evol Microbiol	10.1099/ijsem.0.005015	2021
Phylogeny	Bacillus salacetis sp. nov., a slightly halophilic bacterium from Thai shrimp paste (Ka-pi).	Daroonpunt R, Yiamsombut S, Sitdhipol J, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003286	2019
Phylogeny	Bacillus haikouensis sp. nov., a facultatively anaerobic halotolerant bacterium isolated from a paddy soil.	Li J, Yang G, Lu Q, Zhao Y, Zhou S	Antonie Van Leeuwenhoek	10.1007/s10482-014-0248-7	2014
Phylogeny	Bacillus seohaeanensis sp. nov., a halotolerant bacterium that contains L-lysine in its cell wall.	Lee JC, Lim JM, Park DJ, Jeon CO, Li WJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64237-0	2006
Phylogeny	Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce.	Noguchi H, Uchino M, Shida O, Takano K, Nakamura LK, Komagata K	Int J Syst Evol Microbiol	10.1099/ijs.0.02895-0	2004

References

#7764	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18898
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26422	IJSEM 2117 2005 ( DOI 10.1099/ijs.0.02895-0 , PubMed 15545444 )
#30062	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26422
#38287	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123837	Collection of Institut Pasteur ; Curators of the CIP; CIP 108672
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rossellomorea vietnamensis (DSM 18898, CIP 108672, HSCC 1663)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

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Observation

Metabolite utilization

Metabolite production

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Pathway annotation

API zym

API 50CHac

API biotype100

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Genome browser: GCA_001591825

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