Cellulosimicrobium cellulans (DSM 20106, ATCC 21681, NCIB 11440)

Name: Cellulosimicrobium cellulans (DSM 20106, ATCC 21681, NCIB 11440)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12572

Type strain

Culture col. no. DSM 20106 ATCC 21681 NCIB 11440 JCM 6201 BCRC 11636 9 more

NCBI tax ID(s) 1710

Special Collections DSMZ JCM KCTC CIP

Links

Cellulosimicrobium cellulans DSM 20106 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from soil.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 264255

LMG 16238,ATCC 21681,CCRC 11636,CIP 102113,DSM 20106,IAM 13191,IMET 10715,JCM 6201,NCIMB 11440,NCIB 11440,KCTC 3409,VKM Ac-1029,BCRC 11636,CGMCC 1.1938

@ref 20215

Last LPSN update 2025-12-16 09:49:52

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Promicromonosporaceae

Genus Cellulosimicrobium

Species Cellulosimicrobium cellulans

Full scientific name Cellulosimicrobium cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

Synonyms (7)

Cellulomonas cellulans
Brevibacterium lyticum
Nocardia cellulans
"Cellulomonas cartalyticum"
Brevibacterium fermentans
Oerskovia xanthineolytica
Cellulomonas cartae

BacDive ID	Other strains from **Cellulosimicrobium cellulans** (27)	Type strain
12575	C. cellulans DSM 43879, ATCC 12830, DSM 43189, IMET 7404, ... (type strain)
130906	C. cellulans CD1-BL204R1, DSM 29131
12571	C. cellulans DSM 7461
12573	C. cellulans DSM 20155, NCIB 9097
12574	C. cellulans DSM 20424, ATCC 21606, JCM 20471, CIP 78.63, ...
12576	C. cellulans DSM 43881, IMET 7075
12577	C. cellulans 1a(3), 24 Foal Blackwell, B10, FT 55-75, ...
12578	C. cellulans LL G-62, DSM 46030, ATCC 27402, CECT 3050, ...
12579	C. cellulans LL Y 13-4, LL Y13-4, DSM 46031, ATCC 27401, ...
12580	C. cellulans X 64, DSM 46215, CIP 66.11, IMET 10374, NCIB ...
103252	C. cellulans ST027450(HKI),
103253	C. cellulans ST032941(HKI), S024,
103254	C. cellulans ST032954(HKI), S038,
103255	C. cellulans ST032958(HKI), S042,
103256	C. cellulans ST033024(HKI),
103257	C. cellulans ST032577(HKI),
134800	C. cellulans CIP 66.26
135111	C. cellulans JL 43 GO, CIP 104849
135835	C. cellulans R424, CIP 101190
137827	C. cellulans 660.84, CIP 101063
139191	C. cellulans CIP 101191
145539	C. cellulans CCUG 28795
150973	C. cellulans CCUG 42917
153636	C. cellulans CCUG 50454
156459	C. cellulans CCUG 61916
157317	C. cellulans IMI 378895
162590	C. cellulans JCM 1972, ATCC 15921, BCRC 10023, CGMCC 1.1920, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
117237	positive	rod-shaped
125438			92.5
125438	positive		93.916
125439	positive		99.7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8531	CORYNEBACTERIUM AGAR (DSMZ Medium 53)	Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
40362	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
8531	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
117237	CIP Medium 72	Medium recipe at CIP
117237	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8531	positive	growth	28	mesophilic
40362	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
117237	facultative anaerobe
125439	obligate aerobe	98.9

Compound production

@ref	Compound
8531	single cell protein
20216	Single cell protein

Murein

@ref	Murein short key	Type
8531	A11.37	A4alpha L-Lys-D-Ser-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
117237	17632 ChEBI	nitrate	+	reduction
117237	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117237	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117237	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117237	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
117237	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117237	-	+	+	-	-	+	+	+	+	-	+	+	-	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
117237	not determinedn.d.	+	-	-	+	+	+	-	-	+/-	+	+	+	+	-	-	-	-	-	-	+/-	+/-	+	+/-	+	+	+	+	+	+	+/-	+	+	-	-	-	+	+	-	+	+	+	-	-	+/-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
8531	soil
117237	Environment, Soil

Taxonmaps

69479

Global distribution of 16S sequence AB116667 (>99% sequence identity) for Cellulosimicrobium from Microbeatlas

Aquatic Samples	417
Soil Samples	1873
Animal Samples	1680
Plant Samples	1505
Total Samples	5475

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
8531	yes, in single cases	yes, in single cases	1	Risk group (German classification) According to TRBA 466
117237			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690775v1 assembly for Cellulosimicrobium cellulans DSM 20106	contig	GCA_016907755	1710.42	2893668759	1710	78.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8531	Cellulosimicrobium cellulans gene for 16S rRNA	AB116667	1444		1710

GC content

@ref	GC-content (mol%)	Method
8531	76.0
67770	76.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulosimicrobium cellulans DSM 20106
NCBI: GCA_016907755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	70.10	no
125439	motility	BacteriaNetⓘ	no	76.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulosimicrobium cellulans strain DSM 20106
PATRIC: 1710.42

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.92	no
125438	anaerobic	anaerobicⓘ	no	94.38	no
125438	spore-forming	spore-formingⓘ	no	57.31	no
125438	aerobic	aerobicⓘ	yes	67.86	yes
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

References

#8531	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20106
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#40362	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117237	Collection of Institut Pasteur ; Curators of the CIP; CIP 102113
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us