Prevotella fusca (DSM 22504, CCUG 57946, W1435)

Name: Prevotella fusca (DSM 22504, CCUG 57946, W1435)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12567

Type strain

Strain Designation W1435

Culture col. no. DSM 22504 CCUG 57946 W1435 JCM 17724

NCBI tax ID(s) 1236517 589436

Special Collections DSMZ CCUG JCM

History DSMZ <- J. Downes, King's College London, United Kingdom <- W. G. Wade; W1435 JCM <-- CCUG 57946 <-- J. Downes <-- W. Wade W1435.

Links

Prevotella fusca W1435 is an anaerobe bacterium that was isolated from human oral cavity; periodontic subgingival plaque.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400544

JCM 17724,DSM 22504,CCUG 57946

@ref 20215

Last LPSN update 2026-05-29 08:27:50

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella fusca

Full scientific name Prevotella fusca Downes and Wade 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.691
125439	negative	97.315

Colony morphology

61533

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16373	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
16373	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
16373	positive	growth	37
61533	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16373	anaerobe
61533	anaerobe
125438	anaerobe	90.187
125439	obligate anaerobe	90.083

Spore formation

@ref	Spore formation	Confidence
125438		91.972
125439		99.891

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68367	17057 ChEBI	cellobiose	+	builds acid from	from API 20A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	+	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	+	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	+	builds acid from	from API 20A
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	+	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	+	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	+		from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
16373	-	-	+	+	+	+	+	-	+/-	+/-	-	+	+	+	+	+	+	+	+/-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
16373	-	-	+	+	+	+	+/-	-	-	+	+	+	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
16373	human oral cavity; periodontic subgingival plaque	Homo sapiens		United Kingdom	GBR	Europe
61533	Human oral cavity,periodontic subgingival plaque	Homo sapiens	2000	United Kingdom	GBR	Europe
67770	Human oral cavity	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence FJ545433 (>99% sequence identity) for Prevotella fusca subclade from Microbeatlas

Aquatic Samples	33
Soil Samples	103
Animal Samples	3919
Plant Samples	34
Total Samples	4089

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
16373	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM126201v1 assembly for Prevotella fusca JCM 17724 W1435	complete	GCA_001262015		2684623158	1236517	99.03
66792	ASM1812814v1 assembly for Prevotella fusca JCM 17724 W1435	complete	GCA_018128145	1236517.6		1236517	98.25
66792	ASM61424v1 assembly for Prevotella fusca JCM 17724	contig	GCA_000614245	1236517.4	2585427899	1236517	40.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16373	Prevotella fusca JCM 17724 strain W1435 16S ribosomal RNA gene, partial sequence	FJ545433	1453		1236517
67770	Prevotella fusca gene for 16S ribosomal RNA, partial sequence, strain: JCM 17724	AB683252	1492		1236517

GC content

@ref	GC-content (mol%)	Method
16373	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1812814v1 assembly for Prevotella fusca JCM 17724 W1435
BV-BRC: 1236517.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	90.08	no
125439	motility	BacteriaNetⓘ	no	73.42	no
125439	gram_stain	BacteriaNetⓘ	negative	97.32	no
125439	spore_formation	BacteriaNetⓘ	no	99.89	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella fusca JCM 17724 W1435
NCBI: GCA_001262015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.69	no
125438	anaerobic	anaerobicⓘ	yes	90.19	yes
125438	aerobic	aerobicⓘ	no	96.32	yes
125438	spore-forming	spore-formingⓘ	no	91.97	no
125438	thermophilic	thermophileⓘ	no	95.23	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Metatranscriptomic analysis shows functional alterations in subgingival biofilm in young smokers with periodontitis: a pilot study.	Casarin RCV, Silva RVCD, Paz HES, Stolf CS, Carvalho LM, Noronha MF, Sallum AW, Monteiro MF.	J Appl Oral Sci	10.1590/1678-7757-2024-0031	2024
	Six Bacterial Vaginosis-Associated Species Can Form an In Vitro and Ex Vivo Polymicrobial Biofilm That Is Susceptible to Thymbra capitata Essential Oil.	Rosca AS, Castro J, Sousa LGV, Franca A, Cavaleiro C, Salgueiro L, Cerca N.	Front Cell Infect Microbiol	10.3389/fcimb.2022.824860	2022
Enzymology	Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.	Friis-Nielsen J, Kjartansdottir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Ponten T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S.	Viruses	10.3390/v8020053	2016
Phylogeny	Prevotella fusca sp. nov. and Prevotella scopos sp. nov., isolated from the human oral cavity.	Downes J, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.023861-0	2010

References

#16373	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22504
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61533	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57946
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Prevotella fusca (DSM 22504, CCUG 57946, W1435)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20A

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001262015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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