Name: Prevotella fusca W1435
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12567

Type strain:

Species: Prevotella fusca

Strain Designation: W1435

Culture col. no.: DSM 22504, CCUG 57946, JCM 17724

Strain history: CCUG 57946 <-- J. Downes <-- W. Wade W1435.

NCBI tax ID(s): 1236517 (strain), 589436 (species)

SI-ID 400544

DSM 22504, CCUG 57946

Section

Prevotella fusca W1435 is an anaerobe, mesophilic human pathogen that was isolated from human oral cavity; periodontic subgingival plaque.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella fusca**
	Full Scientific Name (LPSN)	Prevotella fusca Downes and Wade 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %91.138

[Ref.: #61533]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16373]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #16373]

Culture medium growth

[Ref.: #16373]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16373]

Culture medium composition

expand / minimize

[Ref.: #16373]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16373]

Culture medium growth

[Ref.: #16373]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16373]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16373]	growth	37 °C
[Ref.: #61533]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #16373]	Temperature range	mesophilic
[Ref.: #61533]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16373]	Oxygen tolerance	anaerobe
[Ref.: #61533]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68367]	beta-glucosidase	+	3.2.1.21	* from API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #16373]	2061	-	-	+	+	+	+	+	-	+/-	+/-	-	+	+	+	+	+	+	+	+/-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16373]	12401	-	-	+	+	+	+	+/-	-	-	+	+	+	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16373]	Sample type/isolated from	human oral cavity; periodontic subgingival plaque
[Ref.: #16373]	Country	United Kingdom
[Ref.: #16373]	Country ISO 3 Code	GBR
[Ref.: #16373]	Continent	Europe

[Ref.: #61533]	Sample type/isolated from	Human oral cavity,periodontic subgingival plaque
[Ref.: #61533]	Sampling date	2000
[Ref.: #61533]	Country	United Kingdom
[Ref.: #61533]	Country ISO 3 Code	GBR
[Ref.: #61533]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Subgingival plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ545433 (>99% sequence identity) for Prevotella fusca subclade from Microbeatlas

Aquatic Samples	33
Soil Samples	103
Animal Samples	3919
Plant Samples	34
Total Samples	4089

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16373]	Pathogenicity (human)	yes, in single cases
[Ref.: #16373]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16373]	Prevotella fusca JCM 17724 strain W1435 16S ribosomal RNA gene, partial sequence	FJ545433	1453	ENA	1236517 tax ID
[Ref.: #67770]	Prevotella fusca gene for 16S ribosomal RNA, partial sequence, strain: JCM 17724	AB683252	1492	ENA	1236517 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella fusca JCM 17724 W1435	GCA_001262015	complete	GenBank	1236517 tax ID	*
[Ref.: #66792]	Prevotella fusca JCM 17724 W1435	GCA_018128145	complete	GenBank	1236517 tax ID	*
[Ref.: #66792]	Prevotella fusca JCM 17724	GCA_000614245	contig	GenBank	1236517 tax ID	*
[Ref.: #66792]	Prevotella fusca JCM 17724	1236517.4	wgs	PATRIC	1236517 tax ID	*
[Ref.: #66792]	Prevotella fusca JCM 17724 strain W1435	1236517.6	complete	PATRIC	1236517 tax ID	*
[Ref.: #66792]	Prevotella fusca W1435	2684623158	complete	JGI IMG/M	1236517 tax ID	*

[Ref.: #16373]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella fusca JCM 17724 W1435 NCBI: GCA_001262015.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella fusca JCM 17724 W1435 NCBI: GCA_001262015.1
[Ref.: #69480]	motile	no	90.886	no
[Ref.: #69480]	flagellated	no	96.218	no
[Ref.: #69480]	gram-positive	no	97.01	no
[Ref.: #69480]	anaerobic	yes	97.972	yes
[Ref.: #69480]	aerobic	no	97.999	yes
[Ref.: #69480]	halophile	no	81.075	no
[Ref.: #69480]	spore-forming	no	96.073	no
[Ref.: #69480]	thermophile	no	98.22	yes
[Ref.: #69480]	glucose-util	yes	87.37	no
[Ref.: #69480]	glucose-ferment	yes	60.197	no

Availability in culture collections External links

[Ref.: #16373]

Culture collection no.

DSM 22504, CCUG 57946, JCM 17724

[Ref.: #81781]

SI-ID 400544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella fusca sp. nov. and Prevotella scopos sp. nov., isolated from the human oral cavity.	Downes J, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.023861-0	2010	*

References

#16373

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22504

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61533 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57946

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81781

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400544.1 )

* These data were automatically processed and therefore are not curated

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Prevotella fusca JCM 17724 W1435

Prevotella fusca JCM 17724 W1435

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