Name: Prevotella nanceiensis DSM 19126
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12555

Type strain:

Species: Prevotella nanceiensis

Culture col. no.: DSM 19126, CCUG 54409, CIP 108993, JCM 15639, LBN 293, AIP 261.03, KCTC 15075

Strain history: CCUG 54409 <-- CIP 108993 <-- J.-P. Carlier AIP 261.03 <-- F. Mory LBN 293.

NCBI tax ID(s): 1122988 (strain), 425941 (species)

Other strains from Prevotella nanceiensis

P. nanceiensis CCUG 51941 A
P. nanceiensis CCUG 52085
P. nanceiensis CCUG 66130
P. nanceiensis CCUG 66444

Section

Prevotella nanceiensis DSM 19126 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human blood culture.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella nanceiensis**
	Full Scientific Name (LPSN)	Prevotella nanceiensis Alauzet et al. 2007

Synonym

"Hoylesella nanceiensis"

Information on morphological and physiological properties Morphology

[Ref.: #32235]	Gram stain	negative
[Ref.: #32235]	Cell length	0.75 µm
[Ref.: #32235]	Cell width	0.45 µm
[Ref.: #32235]	Cell shape	rod-shaped
[Ref.: #32235]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #32235]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7924]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7924]

Culture medium growth

[Ref.: #7924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7924]

Culture medium composition

expand / minimize

[Ref.: #7924]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7924]

Culture medium growth

[Ref.: #7924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7924]

Culture medium composition

expand / minimize

[Ref.: #40080]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #40080]

Culture medium growth

[Ref.: #40080]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7924]	growth	37 °C
[Ref.: #40080]	growth	37 °C
[Ref.: #60169]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7924]	Temperature range	mesophilic
[Ref.: #40080]	Temperature range	mesophilic
[Ref.: #60169]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7924]	Oxygen tolerance	anaerobe
[Ref.: #32235]	Oxygen tolerance	anaerobe
[Ref.: #60169]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.863

[Ref.: #32235]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32235]	acetate ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #32235]	esculin ChEBI	+	hydrolysis
[Ref.: #32235]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #32235]	lactate ChEBI	+	carbon source
[Ref.: #32235]	lactose ChEBI	+	carbon source
[Ref.: #32235]	maltose ChEBI	+	carbon source
[Ref.: #32235]	mannose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #32235]	raffinose ChEBI	+	carbon source
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #32235]	succinate ChEBI	+	carbon source
[Ref.: #32235]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #32235]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #32235]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7924]	10976	-	-	+	+	+	+	+	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7924]	Sample type/isolated from	human blood culture
[Ref.: #7924]	Geographic location (country and/or sea, region)	Nancy
[Ref.: #7924]	Country	France
[Ref.: #7924]	Country ISO 3 Code	FRA
[Ref.: #7924]	Continent	Europe

[Ref.: #60169]	Sample type/isolated from	Human blood,78-yr-old male
[Ref.: #60169]	Sampling date	2003-01-01
[Ref.: #60169]	Geographic location (country and/or sea, region)	Nancy
[Ref.: #60169]	Country	France
[Ref.: #60169]	Country ISO 3 Code	FRA
[Ref.: #60169]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human clinical samples
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Blood culture
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY957555 (>99% sequence identity) for Prevotella from Microbeatlas

Aquatic Samples	2360
Soil Samples	2475
Animal Samples	102781
Plant Samples	723
Total Samples	108339

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7924]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella nanceiensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 15639	AB547695	1489	ENA	425941 tax ID
[Ref.: #7924]	Prevotella nanceiensis strain AIP 261.03 16S ribosomal RNA gene, partial sequence	AY957555	1394	ENA	425941 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella nanceiensis DSM 19126 = JCM 15639 DSM 19126	GCA_000379965	scaffold	GenBank	1122988 tax ID
[Ref.: #67770]	Prevotella nanceiensis DSM 19126 = JCM 15639 JCM 15639	GCA_000613985	contig	GenBank	1122988 tax ID
[Ref.: #66792]	Prevotella nanceiensis DSM 19126	1122988.3	wgs	PATRIC	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis JCM 15639	1236507.3	wgs	PATRIC	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis JCM 15639	2585427904	draft	JGI IMG/M	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis DSM 19126	2514885007	draft	JGI IMG/M	1122988 tax ID	*

[Ref.: #7924]	GC-content	39.4 mol%
[Ref.: #7924]	GC-content	38.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	39.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella nanceiensis JCM 15639 PATRIC: 1236507.3
[Ref.: #69480]	spore-forming	no	100	yes
[Ref.: #69480]	anaerobic	yes	98.863	yes
[Ref.: #69480]	gram-positive	no	99.998	yes
[Ref.: #69480]	thermophile	no	99.966	no
[Ref.: #69480]	motile	no	87.21	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella nanceiensis JCM 15639 PATRIC: 1236507.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #7924]

Culture collection no.

DSM 19126, CCUG 54409, CIP 108993, JCM 15639, LBN 293, AIP 261.03, KCTC 15075

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella nanceiensis sp. nov., isolated from human clinical samples.	Alauzet C, Mory F, Carlier JP, Marchandin H, Jumas-Bilak E, Lozniewski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65173-0	2007	*

References

#7924

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19126

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32235

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28477 (see below)

#40080 ; Curators of the CIP;
#60169 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54409

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28477

IJSEM 2216 2007 ( DOI 10.1099/ijs.0.65173-0 , PubMed 17911286 )

* These data were automatically processed and therefore are not curated

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Prevotella nanceiensis JCM 15639

Prevotella nanceiensis JCM 15639

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