Name: Prevotella nanceiensis DSM 19126
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12555

Type strain:

Species: Prevotella nanceiensis

Culture col. no.: DSM 19126, CCUG 54409, CIP 108993, JCM 15639, LBN 293, AIP 261.03, KCTC 15075, AIP 261-03

Strain history: CIP <- 2005, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 261-03

NCBI tax ID(s): 425941 (species)

Special Collections

Other strains from Prevotella nanceiensis

Section

When using BacDive for research please cite our paper

Prevotella nanceiensis DSM 19126 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human blood culture.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella nanceiensis**
	Full Scientific Name (LPSN)	Prevotella nanceiensis Alauzet et al. 2007

Synonym

Hoylesella nanceiensis

Information on morphological and physiological properties Morphology

[Ref.: #32235]	Gram stain	negative
[Ref.: #121231]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.14
[Ref.: #125439]	Gram stain	negative Confidence in %99.7

[Ref.: #32235]	Cell length	0.75 µm

[Ref.: #32235]	Cell width	0.45 µm

[Ref.: #32235]	Cell shape	rod-shaped
[Ref.: #121231]	Cell shape	rod-shaped

[Ref.: #32235]	Motility	no
[Ref.: #121231]	Motility	no

[Ref.: #32235]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7924]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7924]

Culture medium growth

[Ref.: #7924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7924]

Culture medium composition

expand / minimize

[Ref.: #7924]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7924]

Culture medium growth

[Ref.: #7924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7924]

Culture medium composition

expand / minimize

[Ref.: #40080]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #40080]

Culture medium growth

[Ref.: #40080]

Culture medium composition

expand / minimize

[Ref.: #121231]

Culture medium

CIP Medium 20

[Ref.: #121231]

Culture medium growth

[Ref.: #121231]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7924]	growth	37 °C
[Ref.: #40080]	growth	37 °C
[Ref.: #60169]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7924]	Oxygen tolerance	anaerobe
[Ref.: #32235]	Oxygen tolerance	anaerobe
[Ref.: #60169]	Oxygen tolerance	anaerobe

[Ref.: #32235]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32235]	acetate ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #32235]	esculin ChEBI	+	hydrolysis
[Ref.: #32235]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #32235]	lactate ChEBI	+	carbon source
[Ref.: #32235]	lactose ChEBI	+	carbon source
[Ref.: #32235]	maltose ChEBI	+	carbon source
[Ref.: #32235]	mannose ChEBI	+	carbon source
[Ref.: #121231]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #121231]	nitrite ChEBI	-	reduction
[Ref.: #32235]	raffinose ChEBI	+	carbon source
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #32235]	succinate ChEBI	+	carbon source
[Ref.: #32235]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121231]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #32235]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #32235]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #121231]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121231]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #121231]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7924]	13617	-	-	+	+	+	+	+	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #7924]	14818	-	-	+/-	+	+	+	+/-	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121231]	11598	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7924]	Sample type/isolated from	human blood culture
[Ref.: #7924]	Geographic location (country and/or sea, region)	Nancy
[Ref.: #7924]	Country	France
[Ref.: #7924]	Country ISO 3 Code	FRA
[Ref.: #7924]	Continent	Europe

[Ref.: #60169]	Sample type/isolated from	Human blood,78-yr-old male
[Ref.: #60169]	Sampling date	2003-01-01
[Ref.: #60169]	Geographic location (country and/or sea, region)	Nancy
[Ref.: #60169]	Country	France
[Ref.: #60169]	Country ISO 3 Code	FRA
[Ref.: #60169]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human clinical samples

[Ref.: #121231]	Sample type/isolated from	Human, Blood
[Ref.: #121231]	Geographic location (country and/or sea, region)	Nancy
[Ref.: #121231]	Country	France
[Ref.: #121231]	Country ISO 3 Code	FRA
[Ref.: #121231]	Continent	Europe
[Ref.: #121231]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Blood culture
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY957555 (>99% sequence identity) for Prevotella from Microbeatlas

Aquatic Samples	2360
Soil Samples	2475
Animal Samples	102781
Plant Samples	723
Total Samples	108339

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7924]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121231]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella nanceiensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 15639	AB547695	1489	GenBank ENA	425941 tax ID
[Ref.: #7924]	Prevotella nanceiensis strain AIP 261.03 16S ribosomal RNA gene, partial sequence	AY957555	1394	GenBank ENA	425941 tax ID
[Ref.: #124043]	Prevotella nanceiensis JCM 15639 gene for 16S rRNA, partial sequence.	LC752378	581	GenBank ENA	425941 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hoylesella nanceiensis DSM 19126 = JCM 15639	GCA_000379965	scaffold	GenBank ENA	1122988 tax ID
[Ref.: #67770]	Hoylesella nanceiensis DSM 19126 = JCM 15639	GCA_000613985	contig	GenBank ENA	1122988 tax ID
[Ref.: #66792]	Prevotella nanceiensis DSM 19126	1122988.3	wgs	PATRIC	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis JCM 15639	1236507.3	wgs	PATRIC	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis JCM 15639	2585427904	draft	JGI IMG/M	1122988 tax ID	*
[Ref.: #66792]	Prevotella nanceiensis DSM 19126	2514885007	draft	JGI IMG/M	1122988 tax ID	*

[Ref.: #7924]	GC-content	39.4 mol%
[Ref.: #7924]	GC-content	38.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	39.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella nanceiensis DSM 19126 PATRIC: 1122988.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.14	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	86.4	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.996	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	91.268	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.75	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87.5	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hoylesella nanceiensis DSM 19126 = JCM 15639 NCBI: GCA_000379965
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	81.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	78.2
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.7

Availability in culture collections External links

[Ref.: #7924]

Culture collection no.

DSM 19126, CCUG 54409, CIP 108993, JCM 15639, LBN 293, AIP 261.03, KCTC 15075, AIP 261-03

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella nanceiensis sp. nov., isolated from human clinical samples.	Alauzet C, Mory F, Carlier JP, Marchandin H, Jumas-Bilak E, Lozniewski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65173-0	2007	*

References

#7924

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19126

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32235

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28477 (see below)

#40080 ; Curators of the CIP;
#60169 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54409

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#121231 Collection of Institut Pasteur ; Curators of the CIP; CIP 108993

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28477

IJSEM 2216 2007 ( DOI 10.1099/ijs.0.65173-0 , PubMed 17911286 )

* These data were automatically processed and therefore are not curated

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Prevotella nanceiensis DSM 19126

Hoylesella nanceiensis DSM 19126 = JCM 15639

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