Prevotella stercorea (CCUG 55595, CB 35, DSM 18206)

Name: Prevotella stercorea (CCUG 55595, CB 35, DSM 18206)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12548

Type strain

Strain Designation CB 35

Culture col. no. CCUG 55595 CB 35 DSM 18206 JCM 13469 KCTC 15079

NCBI tax ID(s) 1002367 363265

Special Collections DSMZ CCUG JCM KCTC Literature strains

History DSMZ <- H. Hayashi; CB35 JCM <-- H. Hayashi CB35.

Links

Prevotella stercorea CB 35 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human faeces.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293996

JCM 13469,DSM 18206,CCUG 55595

@ref 20215

Last LPSN update 2026-05-29 08:27:50

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella stercorea

Full scientific name Prevotella stercorea Hayashi et al. 2007

Synonyms (1)

Leyella stercorea

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31995	negative	1.16 µm	0.33 µm	rod-shaped
125438	negative				93.774
125439	negative				97.686

Colony morphology

@ref	Incubation period
7430	3-7 days
60661	2 days

Pigmentation

31995

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7430	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)	Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
7430	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7430	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7430	positive	growth	37
31995	positive	optimum	37
60661	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7430	anaerobe
31995	anaerobe
60661	anaerobe
125438	anaerobe	91.026
125439	obligate anaerobe	98.051

Spore formation

@ref	Spore formation	Confidence
31995
125439		99.939
125438		95.156

Observation

67770

Observationquinones: MK-12, MK-13

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
31995	17234 ChEBI	glucose	+	carbon source
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
31995	17716 ChEBI	lactose	+	carbon source
31995	17306 ChEBI	maltose	+	carbon source
31995	37684 ChEBI	mannose	+	carbon source
31995	506227 ChEBI	N-acetylglucosamine	+	carbon source
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
31995	16634 ChEBI	raffinose	+	carbon source
31995	17992 ChEBI	sucrose	+	carbon source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
31995	acid phosphatase	+	3.1.3.2
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
31995	alkaline phosphatase	+	3.1.3.1
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7430	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
7430	-	+	+	+	-	+	-	-	-	+	-	+/-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
7430	-	-	+	+	-	+	-	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+	-	-	+	-
7430	-	-	+	+	-	+	-	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7430	human faeces	Homo sapiens	Japan	JPN	Asia
60661	Human feces,52-yr-old healthy man	Homo sapiens	Japan	JPN	Asia
67770	Human feces	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AB244774 (>99% sequence identity) for Prevotella stercorea subclade from Microbeatlas

Aquatic Samples	437
Soil Samples	191
Animal Samples	21622
Plant Samples	63
Total Samples	22313

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7430	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM23588v1 assembly for Leyella stercorea DSM 18206	scaffold	GCA_000235885	1002367.3	2513237318	1002367	25.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7430	Prevotella stercorea gene for 16S ribosomal RNA, partial sequence, strain: CB35	AB244774	1488		1002367

GC content

@ref	GC-content (mol%)	Method
7430	48.2
67770	48.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM23588v1 assembly for Leyella stercorea DSM 18206
NCBI: GCA_000235885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.05	no
125439	motility	BacteriaNetⓘ	no	70.71	no
125439	gram_stain	BacteriaNetⓘ	negative	97.69	no
125439	spore_formation	BacteriaNetⓘ	no	99.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella stercorea DSM 18206
PATRIC: 1002367.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.77	no
125438	anaerobic	anaerobicⓘ	yes	91.03	no
125438	spore-forming	spore-formingⓘ	no	95.16	yes
125438	aerobic	aerobicⓘ	no	95.95	yes
125438	thermophilic	thermophileⓘ	no	95.81	no
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces.	Hayashi H, Shibata K, Sakamoto M, Tomita S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64778-0	2007
Phylogeny	Prevotella merdae sp. nov., a new bacterial species isolated from human faeces.	Maaloum M, Afouda P, Lo CI, Dubourg G, Nguyen TT, Levasseur A, Saile R, Raoult D, Fournier PE	FEMS Microbiol Lett	10.1093/femsle/fnac066	2022

References

#7430	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18206
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28249	IJSEM 941 2007 ( DOI 10.1099/ijs.0.64778-0 , PubMed 17473237 )
#31995	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28249
#60661	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55595
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Prevotella stercorea (CCUG 55595, CB 35, DSM 18206)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000235885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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