Name: Segatella copri DSM 18205
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12547

Type strain:

Species: Segatella copri

Culture col. no.: DSM 18205, JCM 13464, CCUG 58058, CB 7

Strain history: H. Hayashi CB7.

NCBI tax ID(s): 165179 (species)

SI-ID 308623

JCM 13464, DSM 18205, CCUG 58058

Special Collections

Section

Segatella copri DSM 18205 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human faeces.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Segatella*
	Species	**Segatella copri**
	Full Scientific Name (LPSN)	Segatella copri (Hayashi et al. 2007) Hitch et al. 2023

Synonym

Prevotella copri

Information on morphological and physiological properties Morphology

[Ref.: #31995]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.047

[Ref.: #31995]	Cell length	0.95 µm

[Ref.: #31995]	Cell width	0.83 µm

[Ref.: #31995]	Cell shape	rod-shaped

[Ref.: #31995]	Motility	no

[Ref.: #7429]	Type of hemolysis	gamma
[Ref.: #7429]	Incubation period	2-3 days

[Ref.: #31995]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7429]

Culture medium

SCHAEDLER BROTH (ROTH; 5772) (DSMZ Medium 1669)

[Ref.: #7429]

Culture medium growth

[Ref.: #7429]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7429]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7429]	growth	37 °C
[Ref.: #31995]	optimum	37 °C
[Ref.: #61579]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7429]	Oxygen tolerance	anaerobe
[Ref.: #31995]	Oxygen tolerance	anaerobe
[Ref.: #61579]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.765

[Ref.: #31995]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.153
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-10, MK-11, MK-12, MK-13

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31995]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31995]	cellobiose ChEBI	+	carbon source
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #31995]	esculin ChEBI	+	hydrolysis
[Ref.: #31995]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #31995]	lactose ChEBI	+	carbon source
[Ref.: #31995]	maltose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #31995]	raffinose ChEBI	+	carbon source
[Ref.: #31995]	rhamnose ChEBI	+	carbon source
[Ref.: #31995]	salicin ChEBI	+	carbon source
[Ref.: #31995]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31995]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #31995]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #31995]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #31995]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7429]	12982	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	12233	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	12234	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	12235	-	-	+	+	+/-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #7429]	12236	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	12237	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	12238	-	-	+	+	+/-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	12239	-	-	+	+	+/-	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	12947	-	-	+	+	+/-	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	12232	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7429]	Sample type/isolated from	human faeces
[Ref.: #7429]	Country	Japan
[Ref.: #7429]	Country ISO 3 Code	JPN
[Ref.: #7429]	Continent	Asia

[Ref.: #61579]	Sample type/isolated from	Human feces,52-yr-old healthy man
[Ref.: #61579]	Country	Japan
[Ref.: #61579]	Country ISO 3 Code	JPN
[Ref.: #61579]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7429]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31995]	Prevotella copri gene for 16S rRNA, partial sequence, strain: CB7	AB064923	1494	GenBank ENA	537011 tax ID
[Ref.: #7429]	Prevotella copri gene for 16S ribosomal RNA, partial sequence, strain: JCM 13464	AB649279	1493	GenBank ENA	537011 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Segatella copri DSM 18205	GCA_000157935	scaffold	GenBank ENA	537011 tax ID
[Ref.: #66792]	Prevotella copri DSM 18205 strain FDAARGOS_1573	537011.437	complete	PATRIC	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205 NZ_Prevotella_copri_PS131S11_mod	GCA_902167755	contig	GenBank ENA	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205	537011.5	wgs	PATRIC	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205 strain NZ_Prevotella_copri_PS131S11_mod	537011.429	wgs	PATRIC	537011 tax ID	*
[Ref.: #66792]	Prevotella copri pcref	165179.299	wgs	PATRIC	165179 tax ID	*

[Ref.: #7429]	GC-content	45.3 mol%
[Ref.: #7429]	GC-content	44.8 mol%	sequence analysis
[Ref.: #67770]	GC-content	45.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella copri DSM 18205 FDAARGOS_1573 NCBI: GCA_020735445.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella copri DSM 18205 FDAARGOS_1573 NCBI: GCA_020735445.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.047	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	93.765	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.969	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.153	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.912	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	yes

Availability in culture collections External links

[Ref.: #7429]

Culture collection no.

DSM 18205, JCM 13464, CCUG 58058, CB 7

[Ref.: #81762]

SI-ID 308623

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Cultivation of the gut bacterium Prevotella copri DSM 18205(T) using glucose and xylose as carbon sources.	Huang F, Sardari RRR, Jasilionis A, Book O, Oste R, Rascon A, Heyman-Linden L, Holst O, Karlsson EN	Microbiologyopen	10.1002/mbo3.1213	2021	*
Metabolism	Novel xylan-degrading enzymes from polysaccharide utilizing loci of Prevotella copri DSM18205.	Linares-Pasten JA, Hero JS, Pisa JH, Teixeira C, Nyman M, Adlercreutz P, Martinez MA, Karlsson EN	Glycobiology	10.1093/glycob/cwab056	2021	*
Phylogeny	Development of a real-time quantitative PCR method for detection and quantification of Prevotella copri.	Verbrugghe P, Van Aken O, Hallenius F, Nilsson A	BMC Microbiol	10.1186/s12866-020-02063-4	2021	*
Phylogeny	Prevotella hominis sp. nov., isolated from human faeces.	Liou JS, Huang CH, Ikeyama N, Lee AY, Chen IC, Blom J, Chen CC, Chen CH, Lin YC, Hsieh SY, Huang L, Ohkuma M, Watanabe K, Sakamoto M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004342	2020	*
Phylogeny	Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces.	Hayashi H, Shibata K, Sakamoto M, Tomita S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64778-0	2007	*

References

#7429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18205

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31995

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28249 (see below)

#61579 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58058

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81762

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308623.1 )

#28249

IJSEM 941 2007 ( DOI 10.1099/ijs.0.64778-0 , PubMed 17473237 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Prevotella copri in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Prevotella copri DSM 18205 FDAARGOS_1573

Prevotella copri DSM 18205 FDAARGOS_1573

Change proposal

Change proposal