Name: Prevotella copri DSM 18205
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12547

Type strain:

Species: Prevotella copri

Culture col. no.: DSM 18205, JCM 13464, CCUG 58058, CB 7

Strain history: H. Hayashi CB7.

NCBI tax ID(s): 537011 (strain), 165179 (species)

Other strains from Prevotella copri

P. copri LKV-178-WT-2C, DSM 108494
P. copri JCM 13465
P. copri JCM 13466
P. copri JCM 13467
P. copri JCM 13468
P. copri P4E5, HDE04, DSM 108151
P. copri P3A, HDA03, DSM 108386
P. copri P1B, HDB01, DSM 108419
P. copri P1C, HDC01, DSM 108556
P. copri P4D, HDD04, DSM 108558
P. copri HDA04, DSM 111805
P. copri HDD12, DSM 111806
P. copri HDE06, DSM 111807
P. copri RPA01, DSM 111808
P. copri RHA03, DSM 111828
P. copri HDD05, DSM 112105

Section

Prevotella copri DSM 18205 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella copri**
	Full Scientific Name (PNU)	Prevotella copri Hayashi et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31995]	Gram stain	negative
[Ref.: #31995]	Cell length	0.95 µm
[Ref.: #31995]	Cell width	0.83 µm
[Ref.: #31995]	Cell shape	rod-shaped
[Ref.: #31995]	Motility	no

[Ref.: #7429]	Type of hemolysis	gamma
[Ref.: #7429]	Incubation period	2-3 days

[Ref.: #31995]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7429]

Culture medium

SCHAEDLER BROTH (ROTH; 5772) (DSMZ Medium 1669)

[Ref.: #7429]

Culture medium growth

[Ref.: #7429]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7429]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7429]	growth	37 °C
[Ref.: #31995]	optimum	37 °C
[Ref.: #61579]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7429]	Temperature range	mesophilic
[Ref.: #31995]	Temperature range	mesophilic
[Ref.: #61579]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7429]	Oxygen tolerance	anaerobe
[Ref.: #31995]	Oxygen tolerance	anaerobe
[Ref.: #61579]	Oxygen tolerance	anaerobe

[Ref.: #31995]

Ability of spore formation

[Ref.: #67770]

Observation

quinones: MK-10, MK-11, MK-12, MK-13

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31995]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31995]	cellobiose ChEBI	+	carbon source
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #31995]	esculin ChEBI	+	hydrolysis
[Ref.: #31995]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #31995]	lactose ChEBI	+	carbon source
[Ref.: #31995]	maltose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #31995]	raffinose ChEBI	+	carbon source
[Ref.: #31995]	rhamnose ChEBI	+	carbon source
[Ref.: #31995]	salicin ChEBI	+	carbon source
[Ref.: #31995]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31995]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #31995]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #31995]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #31995]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7429]	11687	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	11652	-	-	+	+	+/-	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	10946	-	-	+	+	+/-	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	10945	-	-	+	+	+/-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	10944	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #7429]	10943	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	10942	-	-	+	+	+/-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #7429]	10941	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	10940	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #7429]	10939	-	-	+	+	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7429]	Sample type/isolated from	human faeces
[Ref.: #7429]	Country	Japan
[Ref.: #7429]	Country ISO 3 Code	JPN
[Ref.: #7429]	Continent	Asia

[Ref.: #61579]	Sample type/isolated from	Human feces,52-yr-old healthy man
[Ref.: #61579]	Country	Japan
[Ref.: #61579]	Country ISO 3 Code	JPN
[Ref.: #61579]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7429]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31995]	Prevotella copri gene for 16S rRNA, partial sequence, strain: CB7	AB064923	1494	GenBank	537011 tax ID
[Ref.: #7429]	Prevotella copri gene for 16S ribosomal RNA, partial sequence, strain: JCM 13464	AB649279	1493	ENA	537011 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella copri DSM 18205 FDAARGOS_1573	GCA_020735445	complete	GenBank	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205 DSM 18205	GCA_009495405	contig	GenBank	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205 NZ_Prevotella_copri_PS131S11_mod	GCA_902167755	contig	GenBank	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205	537011.5	wgs	PATRIC	537011 tax ID	*
[Ref.: #66792]	Prevotella copri DSM 18205 strain NZ_Prevotella_copri_PS131S11_mod	537011.429	wgs	PATRIC	537011 tax ID	*
[Ref.: #66792]	Prevotella copri pcref	165179.299	wgs	PATRIC	165179 tax ID	*

[Ref.: #7429]	GC-content	45.3 mol%
[Ref.: #7429]	GC-content	44.8 mol%	sequence analysis
[Ref.: #67770]	GC-content	45.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7429]

Culture collection no.

DSM 18205, JCM 13464, CCUG 58058, CB 7

[Ref.: #20218]

Associated Passport(s) in StrainInfo

745813, 719020

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces.	Hayashi H, Shibata K, Sakamoto M, Tomita S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64778-0	2007	*
Phylogeny	Prevotella hominis sp. nov., isolated from human faeces.	Liou JS, Huang CH, Ikeyama N, Lee AY, Chen IC, Blom J, Chen CC, Chen CH, Lin YC, Hsieh SY, Huang L, Ohkuma M, Watanabe K, Sakamoto M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004342	2020	*
Phylogeny	Development of a real-time quantitative PCR method for detection and quantification of Prevotella copri.	Verbrugghe P, Van Aken O, Hallenius F, Nilsson A	BMC Microbiol	10.1186/s12866-020-02063-4	2021	*
Metabolism	Novel xylan-degrading enzymes from polysaccharide utilizing loci of Prevotella copri DSM18205.	Linares-Pasten JA, Hero JS, Pisa JH, Teixeira C, Nyman M, Adlercreutz P, Martinez MA, Karlsson EN	Glycobiology	10.1093/glycob/cwab056	2021	*
Metabolism	Cultivation of the gut bacterium Prevotella copri DSM 18205(T) using glucose and xylose as carbon sources.	Huang F, Sardari RRR, Jasilionis A, Book O, Oste R, Rascon A, Heyman-Linden L, Holst O, Karlsson EN	Microbiologyopen	10.1002/mbo3.1213	2021	*

References

#7429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18205

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31995

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28249 (see below)

#61579 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58058

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28249

IJSEM 941 2007 ( DOI 10.1099/ijs.0.64778-0 , PubMed 17473237 )

* These data were automatically processed and therefore are not curated

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