Name: Segatella baroniae E 9.33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12541

Type strain:

Species: Segatella baroniae

Strain Designation: E 9.33

Culture col. no.: DSM 16972, CCUG 50418, JCM 13447

Strain history: CCUG 50418 <-- J. Downes E9.33 <-- W. G. Wade E9.33.

NCBI tax ID(s): 305719 (species)

SI-ID 215260

CCUG 50418, DSM 16972, JCM 13447

Special Collections

Section

Segatella baroniae E 9.33 is an anaerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Human oral cavity, exodontic infection.

Gram-negative
ovoid-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Segatella*
	Species	**Segatella baroniae**
	Full Scientific Name (LPSN)	Segatella baroniae (Downes et al. 2005) Hitch et al. 2023

Synonym

Prevotella baroniae

Information on morphological and physiological properties Morphology

[Ref.: #31472]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.328

[Ref.: #31472]	Cell length	1.3 µm

[Ref.: #31472]	Cell width	0.6 µm

[Ref.: #31472]	Cell shape	ovoid-shaped

[Ref.: #31472]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #6587]	Incubation period	3-7 days

[Ref.: #58859]	Incubation period	2 days

[Ref.: #31472]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6587]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #6587]

Culture medium growth

[Ref.: #6587]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6587]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6587]	growth	35 °C
[Ref.: #58859]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6587]	Oxygen tolerance	anaerobe
[Ref.: #31472]	Oxygen tolerance	anaerobe
[Ref.: #58859]	Oxygen tolerance	anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.472
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #31472]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31472]	cellobiose ChEBI	+	carbon source
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #31472]	esculin ChEBI	+	hydrolysis
[Ref.: #31472]	fructose ChEBI	+	carbon source
[Ref.: #31472]	gelatin ChEBI	+	carbon source
[Ref.: #31472]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #31472]	lactose ChEBI	+	carbon source
[Ref.: #31472]	maltose ChEBI	+	carbon source
[Ref.: #31472]	mannose ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #31472]	raffinose ChEBI	+	carbon source
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #31472]	salicin ChEBI	+	carbon source
[Ref.: #31472]	sucrose ChEBI	+	carbon source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #31472]	gelatinase	+
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6587]	12907	-	-	+	+	-	+	+	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #6587]	12250	-	-	+	+	-	+	+	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6587]	Sample type/isolated from	Human oral cavity, exodontic infection
[Ref.: #6587]	Geographic location (country and/or sea, region)	London
[Ref.: #6587]	Country	United Kingdom
[Ref.: #6587]	Country ISO 3 Code	GBR
[Ref.: #6587]	Continent	Europe

[Ref.: #58859]	Sample type/isolated from	Human oral cavity,endodontic infection
[Ref.: #58859]	Sampling date	2000-03-01
[Ref.: #58859]	Geographic location (country and/or sea, region)	London
[Ref.: #58859]	Country	United Kingdom
[Ref.: #58859]	Country ISO 3 Code	GBR
[Ref.: #58859]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Tooth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ940882 (>99% sequence identity) for Prevotella baroniae subclade from Microbeatlas

Aquatic Samples	205
Soil Samples	346
Animal Samples	16607
Plant Samples	127
Total Samples	17285

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6587]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella baroniae gene for 16S ribosomal RNA, partial sequence, strain: JCM 13447	AB547671	1494	GenBank ENA	305719 tax ID
[Ref.: #6587]	Prevotella baroniae 16S ribosomal RNA gene, partial sequence	AY840553	1455	GenBank ENA	305719 tax ID
[Ref.: #20218]	Prevotella baroniae strain DSM 16972 16S ribosomal RNA gene, partial sequence	FJ940882	1455	GenBank ENA	305719 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella baroniae DSM 16972 = JCM 13447	GCA_000426585	scaffold	GenBank ENA	1122980 tax ID
[Ref.: #67770]	Prevotella baroniae DSM 16972 = JCM 13447	GCA_000613565	contig	GenBank ENA	1122980 tax ID
[Ref.: #66792]	Prevotella baroniae DSM 16972	1122980.3	wgs	PATRIC	1122980 tax ID	*
[Ref.: #66792]	Prevotella baroniae JCM 13447	1235823.4	wgs	PATRIC	1122980 tax ID	*
[Ref.: #66792]	Prevotella baroniae JCM 13447	2585427893	draft	JGI IMG/M	1122980 tax ID	*
[Ref.: #66792]	Prevotella baroniae DSM 16972	2526164515	draft	JGI IMG/M	1122980 tax ID	*

[Ref.: #6587]	GC-content	52 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31472]	GC-content	52 mol%
[Ref.: #6587]	GC-content	53.0 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella baroniae DSM 16972 = JCM 13447 DSM 16972 NCBI: GCA_000426585.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella baroniae DSM 16972 PATRIC: 1122980.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.328	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.785	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.472	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.138	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.775	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #6587]

Culture collection no.

DSM 16972, CCUG 50418, JCM 13447

[Ref.: #81758]

SI-ID 215260

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Metronidazole resistance in Prevotella spp. and description of a new nim gene in Prevotella baroniae.	Alauzet C, Mory F, Teyssier C, Hallage H, Carlier JP, Grollier G, Lozniewski A	Antimicrob Agents Chemother	10.1128/AAC.01003-09	2009	*
Phylogeny	Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity.	Downes J, Sutcliffe I, Tanner ACR, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.63634-0	2005	*

References

#6587

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16972

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31472

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27772 (see below)

#58859 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50418

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81758

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215260.1 )

#27772

IJSEM 1551 2005 ( DOI 10.1099/ijs.0.63634-0 , PubMed 16014480 )

* These data were automatically processed and therefore are not curated

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Prevotella baroniae DSM 16972 = JCM 13447 DSM 16972

Prevotella baroniae DSM 16972

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