Name: Hoylesella shahii EHS11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12539

Type strain:

Species: Hoylesella shahii

Strain Designation: EHS11

Culture col. no.: DSM 15611, JCM 12083, CCUG 51933, KCTC 15078

Strain history: M. Sakamoto EHS11.

NCBI tax ID(s): 1122991 (strain), 228603 (species)

SI-ID 127938

JCM 12083, DSM 15611, CCUG 51933

Section

Hoylesella shahii EHS11 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human oral cavity, saliva of a peridontally healthy subject.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Hoylesella*
	Species	**Hoylesella shahii**
	Full Scientific Name (LPSN)	Hoylesella shahii (Sakamoto et al. 2004) Hitch et al. 2023

Synonym

Prevotella shahii

Information on morphological and physiological properties Morphology

[Ref.: #30045]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #30045]	Cell length	9.15 µm

[Ref.: #30045]	Cell width	0.65 µm

[Ref.: #30045]	Cell shape	rod-shaped

[Ref.: #30045]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.799

[Ref.: #30045]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5929]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #5929]

Culture medium growth

[Ref.: #5929]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5929]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5929]	growth	37 °C
[Ref.: #59371]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #5929]	Temperature range	mesophilic
[Ref.: #59371]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5929]	Oxygen tolerance	anaerobe
[Ref.: #30045]	Oxygen tolerance	anaerobe
[Ref.: #59371]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.69

[Ref.: #30045]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30045]	gelatin ChEBI	+	carbon source
[Ref.: #30045]	glucose ChEBI	+	carbon source
[Ref.: #30045]	lactose ChEBI	+	carbon source
[Ref.: #30045]	maltose ChEBI	+	carbon source
[Ref.: #30045]	mannose ChEBI	+	carbon source
[Ref.: #30045]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30045]	raffinose ChEBI	+	carbon source
[Ref.: #30045]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30045]	acid phosphatase	+	3.1.3.2
[Ref.: #30045]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30045]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30045]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5929]	Sample type/isolated from	human oral cavity, saliva of a peridontally healthy subject
[Ref.: #5929]	Country	Japan
[Ref.: #5929]	Country ISO 3 Code	JPN
[Ref.: #5929]	Continent	Asia

[Ref.: #59371]	Sample type/isolated from	Human saliva,periodontally healthy subject

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB108825 (>99% sequence identity) for Prevotella shahii subclade from Microbeatlas

Aquatic Samples	149
Soil Samples	217
Animal Samples	20236
Plant Samples	76
Total Samples	20678

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5929]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5929]	Prevotella shahii gene for 16S rRNA, complete sequence	AB108825	1490	ENA	228603 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hoylesella shahii DSM 15611 = JCM 12083	GCA_000613445	contig	GenBank	1122991 tax ID
[Ref.: #67770]	Hoylesella shahii DSM 15611 = JCM 12083	GCA_003201715	scaffold	GenBank	1122991 tax ID
[Ref.: #66792]	Prevotella shahii DSM 15611 = JCM 12083	1122991.5	wgs	PATRIC	1122991 tax ID	*
[Ref.: #66792]	Prevotella shahii JCM 12083	1235817.5	wgs	PATRIC	1122991 tax ID	*
[Ref.: #66792]	Prevotella shahii DSM 15611	2585427597	draft	JGI IMG/M	1122991 tax ID	*
[Ref.: #66792]	Prevotella shahii JCM 12083	2585427909	draft	JGI IMG/M	1122991 tax ID	*

[Ref.: #5929]	GC-content	44.3 mol%
[Ref.: #67770]	GC-content	44.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella shahii DSM 15611 = JCM 12083 DSM 15611 NCBI: GCA_003201715.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella shahii DSM 15611 = JCM 12083 PATRIC: 1122991.5
[Ref.: #69480]	motile	no	93.523	yes
[Ref.: #69480]	flagellated	no	97.105	yes
[Ref.: #69480]	gram-positive	no	97.778	no
[Ref.: #69480]	anaerobic	yes	98.395	yes
[Ref.: #69480]	aerobic	no	98.328	yes
[Ref.: #69480]	halophile	no	85.61	no
[Ref.: #69480]	spore-forming	no	95.112	no
[Ref.: #69480]	thermophile	no	98.837	yes
[Ref.: #69480]	glucose-util	yes	86.492	yes
[Ref.: #69480]	glucose-ferment	yes	60.779	no

Availability in culture collections External links

[Ref.: #5929]

Culture collection no.

DSM 15611, JCM 12083, CCUG 51933, KCTC 15078

[Ref.: #81756]

SI-ID 127938

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella koreensis sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion.	Park SN, Lim YK, Shin JH, Jo E, Chang YH, Shin Y, Paek J, Ji S, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01720-w	2019	*
Phylogeny	Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki M, Huang Y, Umeda M, Ishikawa I, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.02876-0	2004	*

References

#5929

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15611

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30045

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26406 (see below)

#59371 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51933

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81756

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127938.1 )

#26406

IJSEM 877 2004 ( DOI 10.1099/ijs.0.02876-0 , PubMed 15143039 )

* These data were automatically processed and therefore are not curated

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Prevotella shahii DSM 15611 = JCM 12083 DSM 15611

Prevotella shahii DSM 15611 = JCM 12083

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