Name: Prevotella denticola 1210
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12529

Type strain:

Species: Prevotella denticola

Strain Designation: 1210

Culture col. no.: DSM 20614, ATCC 35308, NCDO 2352, CCUG 29542, JCM 13449, CIP 104478, NCTC 13067

Strain history: CCUG 29542 <-- ATCC 35308 <-- NCDO 2352 <-- H. N. Shah 1210 <-- S. S. Socransky 1210.

NCBI tax ID(s): 1122982 (strain), 28129 (species)

SI-ID 40987

ATCC 35308, NCDO 2352, CCUG 15558, NCFB 2352, DSM 20614, CCUG 29542, CIP 104478, BCRC 14478, CCRC 14478, NCTC 13067, JCM 13449

Other strains from Prevotella denticola

P. denticola CCUG 31317
P. denticola CCUG 45961
P. denticola JCM 8528, ATCC 33185, BCRC 14430

Section

Prevotella denticola 1210 is an anaerobe, mesophilic human pathogen that was isolated from dental plaque.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella denticola**
	Full Scientific Name (LPSN)	Prevotella denticola (Shah and Collins 1982) Shah and Collins 1990

Synonym

Bacteroides denticola

Information on morphological and physiological properties Morphology

[Ref.: #8962]	Type of hemolysis	alpha/beta
[Ref.: #8962]	Hemolysis ability	1
[Ref.: #8962]	Incubation period	2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8962]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #8962]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8962]	growth	37 °C
[Ref.: #49652]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8962]	Temperature range	mesophilic
[Ref.: #49652]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8962]	Oxygen tolerance	anaerobe
[Ref.: #49652]	Oxygen tolerance	anaerobe

[Ref.: #67770]

Observation

quinones: MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8962]	13261	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+/-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #8962]	12334	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #8962]	12333	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+/-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #8962]	12332	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+/-	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8962]	Sample type/isolated from	dental plaque

[Ref.: #49652]	Sample type/isolated from	Dental plaque

[Ref.: #67770]	Sample type/isolated from	Oral cavity
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY323524 (>99% sequence identity) for Prevotella denticola subclade from Microbeatlas

Aquatic Samples	609
Soil Samples	428
Animal Samples	43085
Plant Samples	330
Total Samples	44452

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8962]	Pathogenicity (human)	yes
[Ref.: #8962]	Pathogenicity (animal)	yes
[Ref.: #8962]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8962]	Prevotella denticola gene for 16S ribosomal RNA, partial sequence, strain: JCM 13449	AB547679	1492	ENA	28129 tax ID
[Ref.: #20218]	Prevotella denticola ATCC 35308 16S ribosomal RNA gene, complete sequence	L16467	1474	ENA	28129 tax ID	*
[Ref.: #20218]	Prevotella denticola 16S ribosomal RNA gene, partial sequence	AY323524	1506	ENA	28129 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella denticola DSM 20614 = JCM 13449	GCA_000421205	scaffold	GenBank	1122982 tax ID	*
[Ref.: #66792]	Prevotella denticola DSM 20614 = JCM 13449	GCA_000613585	contig	GenBank	1122982 tax ID	*
[Ref.: #66792]	Prevotella denticola DSM 20614	1122982.4	wgs	PATRIC	1122982 tax ID	*
[Ref.: #66792]	Prevotella denticola JCM 13449	1236487.4	wgs	PATRIC	1122982 tax ID	*
[Ref.: #66792]	Prevotella denticola strain NCTC13067	28129.12	wgs	PATRIC	28129 tax ID	*
[Ref.: #66792]	Prevotella denticola NCTC 13067	2906457805	draft	JGI IMG/M	28129 tax ID	*

[Ref.: #8962]	GC-content	51.0 mol%
[Ref.: #8962]	GC-content	50.1 mol%	sequence analysis
[Ref.: #67770]	GC-content	51 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella denticola DSM 20614 = JCM 13449 DSM 20614 NCBI: GCA_000421205.1
[Ref.: #69480]	motile	no	90.106	no
[Ref.: #69480]	flagellated	no	96.855	no
[Ref.: #69480]	gram-positive	no	96.808	no
[Ref.: #69480]	anaerobic	yes	98.757	yes
[Ref.: #69480]	aerobic	no	98.402	yes
[Ref.: #69480]	halophile	no	80.525	no
[Ref.: #69480]	spore-forming	no	95.828	no
[Ref.: #69480]	thermophile	no	95.466	no
[Ref.: #69480]	glucose-util	yes	89.078	no
[Ref.: #69480]	glucose-ferment	yes	64.385	no

Availability in culture collections External links

[Ref.: #8962]

Culture collection no.

DSM 20614, ATCC 35308, NCDO 2352, CCUG 29542, JCM 13449, CIP 104478, NCTC 13067

[Ref.: #81748]

SI-ID 40987

References

#8962

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20614

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#49652 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29542

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81748

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40987.1 )

* These data were automatically processed and therefore are not curated

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Prevotella denticola DSM 20614 = JCM 13449 DSM 20614

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