Macellibacteroides fermentans (DSM 23697, CCUG 60892, JCM 16313)

Name: Macellibacteroides fermentans (DSM 23697, CCUG 60892, JCM 16313)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12524

Type strain

Strain Designation LIND7H

Culture col. no. DSM 23697 CCUG 60892 JCM 16313 LIND7H

NCBI tax ID(s) 879969

Special Collections DSMZ CCUG JCM Literature strains

History DSMZ <- M.-L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; LIND7H <- L. Jabari JCM <-- M.-L. Fardeau LIND7H.

Links

Macellibacteroides fermentans LIND7H is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from upflow anaerobic filter treating abattoir wastewaters.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400276

JCM 16313,DSM 23697,CCUG 60892

@ref 20215

Last LPSN update 2026-05-29 08:27:49

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Porphyromonadaceae

Genus Macellibacteroides

Species Macellibacteroides fermentans

Full scientific name Macellibacteroides fermentans Jabari et al. 2012

BacDive ID	Other strains from **Macellibacteroides fermentans** (1)	Type strain
169635	M. fermentans HH-ZS BL40, DSM 104146

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30285	positive	2.5 µm	0.75 µm	rod-shaped
125439	negative				98.212
125438					90

Colony morphology

17348

Incubation period1-2 days

Pigmentation

30285

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17348	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17348	positive	growth	35
30285	positive	growth	20-45
30285	positive	optimum	37.5
62485	positive	growth	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
30285	positive	optimum	7
30285	positive	growth	5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
17348	anaerobe
30285	anaerobe
62485	anaerobe

Spore formation

@ref	Spore formation	Confidence
30285
125439		99.646
125438		91.959

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30285	NaCl	positive	growth	<2 %

Observation

67770

Observationquinones: MK-9, MK-9(H₄), MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30285	4853 ChEBI	esculin	+	hydrolysis

Enzymes

@ref	Value	Activity
30285	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Wastewater
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17348	upflow anaerobic filter treating abattoir wastewaters			Tunisia	TUN	Africa
62485	Wastewater digestor	2011	Insat	Tunisia	TUN	Africa
67770	Upflow anaerobic filter treating abattoir wastewaters in Tunisia

Taxonmaps

69479

Global distribution of 16S sequence HQ020488 (>99% sequence identity) for Macellibacteroides fermentans from Microbeatlas

Aquatic Samples	8663
Soil Samples	798
Animal Samples	9468
Plant Samples	200
Total Samples	19129

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17348	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1340957v1 assembly for Macellibacteroides fermentans DSM 23697	contig	GCA_013409575	879969.3	2849162381	879969	75.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17348	Macellibacteroides fermentans strain LIND7H 16S ribosomal RNA gene, partial sequence	HQ020488	1502		879969

GC content

@ref	GC-content (mol%)	Method
17348	41.4	high performance liquid chromatography (HPLC)
30285	41.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1340957v1 assembly for Macellibacteroides fermentans DSM 23697
NCBI: GCA_013409575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	55.67	no
125439	motility	BacteriaNetⓘ	no	80.04	no
125439	gram_stain	BacteriaNetⓘ	negative	98.21	no
125439	spore_formation	BacteriaNetⓘ	no	99.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Macellibacteroides fermentans strain DSM 23697
PATRIC: 879969.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	66.21	yes
125438	anaerobic	anaerobicⓘ	yes	83.64	no
125438	aerobic	aerobicⓘ	no	84.54	no
125438	spore-forming	spore-formingⓘ	no	91.96	yes
125438	thermophilic	thermophileⓘ	no	94.61	yes
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters.	Jabari L, Gannoun H, Cayol JL, Hedi A, Sakamoto M, Falsen E, Ohkuma M, Hamdi M, Fauque G, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.032508-0	2011

References

#17348	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23697
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26626	IJSEM 2522 2012 ( DOI 10.1099/ijs.0.032508-0 , PubMed 22180609 )
#30285	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26626
#62485	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60892
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Macellibacteroides fermentans (DSM 23697, CCUG 60892, JCM 16313)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013409575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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