Odoribacter splanchnicus (DSM 20712, ATCC 29572, CCUG 21054)

Name: Odoribacter splanchnicus (DSM 20712, ATCC 29572, CCUG 21054)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12520

Type strain

Strain Designation 1651/6

Culture col. no. DSM 20712 ATCC 29572 CCUG 21054 CIP 104287 LMG 8202 5 more

NCBI tax ID(s) 709991 28118

Special Collections DSMZ CCUG JCM CIP

Links

Odoribacter splanchnicus 1651/6 is an anaerobe, mesophilic prokaryote that was isolated from abdominal abscess.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1214

LMG 8202,ATCC 29572,CCM 6029,CCUG 21054,DSM 20712,NCTC 10825,CIP 104287,CCUG 21054 A,JCM 15291

@ref 20215

Last LPSN update 2025-12-16 09:49:52

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Odoribacteraceae

Genus Odoribacter

Species Odoribacter splanchnicus

Full scientific name Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008

Synonyms (1)

Bacteroides splanchnicus

BacDive ID	Other strains from **Odoribacter splanchnicus** (6)	Type strain
145864	O. splanchnicus CCUG 29830
153144	O. splanchnicus CCUG 48576
156994	O. splanchnicus CCUG 68330
157083	O. splanchnicus CCUG 69463
158884	O. splanchnicus f_OSP, DSM 107471
159985	O. splanchnicus Cla-CZ-121, DSM 109117

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.1

Colony morphology

47264

Incubation period2-3 days

Multimedia

@ref:	66793
multimedia content:	EM_DSM_20712_1.jpg
multimedia.multimedia content:	EM_DSM_20712_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9023	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9023	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9023	positive	growth	37	mesophilic
47264	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
9023	anaerobe
47264	anaerobe
125438	anaerobe
125439	anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	isoleucine metabolism	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	pentose phosphate pathway	81.82	9 of 11
66794	vitamin K metabolism	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	purine metabolism	71.28	67 of 94
66794	pyrimidine metabolism	71.11	32 of 45
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	lysine metabolism	69.05	29 of 42
66794	histidine metabolism	68.97	20 of 29
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	d-xylose degradation	63.64	7 of 11
66794	leucine metabolism	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	lipoate biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	arginine metabolism	54.17	13 of 24
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	urea cycle	53.85	7 of 13
66794	tryptophan metabolism	52.63	20 of 38
66794	kanosamine biosynthesis II	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	heme metabolism	50	7 of 14
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	ethanol fermentation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	citric acid cycle	50	7 of 14
66794	non-pathway related	47.37	18 of 38
66794	sulfate reduction	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	oxidative phosphorylation	45.05	41 of 91
66794	degradation of sugar alcohols	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	tyrosine metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	Entner Doudoroff pathway	40	4 of 10
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	metabolism of disaccharids	36.36	4 of 11
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	enterobactin biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	glutathione metabolism	28.57	4 of 14
66794	cysteine metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
9023	-	-	+	+	-	-	-	-	-	+	-	-	-	+	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-
9023	-	-	+	+	-	+/-	-	-	-	+	-	-	+	+	-	+	+	+	-	+	-	+	+/-	+/-	+	-	+/-	-	-
9023	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	+	+	+	-	+	-	+	+	-	+	-	-	+	-
9023	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-
9023	-	-	+	+	-	-	-	-	-	+	-	-	-	+	-	+	+	+/-	-	+	-	+/-	+/-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Other	#Abdomen
#Host Body-Site	#Other	#Abscess

Isolation

@ref	Sample type
9023	abdominal abscess
47264	Human abdominal abscess
67770	Abdominal abscess

Taxonmaps

69479

Global distribution of 16S sequence NR_074535 (>99% sequence identity) for Odoribacter splanchnicus subclade from Microbeatlas

Aquatic Samples	5874
Soil Samples	1276
Animal Samples	211105
Plant Samples	414
Total Samples	218669

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9023	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Odoribacter splanchnicus DSM 20712 strain FDAARGOS_1579	complete	709991.142	709991	99.57
66792	51342_A02 assembly for Odoribacter splanchnicus NCTC10825	complete	28118.6	28118	98.68
66792	ASM19053v1 assembly for Odoribacter splanchnicus DSM 20712 DSM 220712	complete	709991.3	709991	98.22
66792	ASM2073640v1 assembly for Odoribacter splanchnicus DSM 20712 FDAARGOS_1579	chromosome	709991.141	709991	88.72

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
9023	Odoribacter splanchnicus strain DSM 220712 16S ribosomal RNA, partial sequence	NR_074535	1512	28118
67770	Odoribacter splanchnicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 15291	AB547649	1485	28118
67770	Odoribacter splanchnicus strain NCTC 10825 16S ribosomal RNA gene, partial sequence	L16496	1467	28118

GC content

@ref	GC-content (mol%)	Method
9023	43.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Odoribacter splanchnicus DSM 20712 DSM 220712
NCBI: GCA_000190535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	81.90	no
125439	motility	BacteriaNetⓘ	no	63.80	no
125439	gram_stain	BacteriaNetⓘ	negative	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Odoribacter splanchnicus DSM 20712 DSM 220712
NCBI: GCA_000190535.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	82.14	no
125438	anaerobic	anaerobicⓘ	yes	92.41	yes
125438	aerobic	aerobicⓘ	no	93.44	yes
125438	spore-forming	spore-formingⓘ	no	86.17	no
125438	thermophilic	thermophileⓘ	no	93.75	yes
125438	flagellated	motile2+ⓘ	no	87.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response.	Minot SS, Barry KC, Kasman C, Golob JL, Willis AD.	Genome Biol	10.1186/s13059-021-02355-6	2021
Pathogenicity	Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria.	Seelbinder B, Chen J, Brunke S, Vazquez-Uribe R, Santhaman R, Meyer AC, de Oliveira Lino FS, Chan KF, Loos D, Imamovic L, Tsang CC, Lam RP, Sridhar S, Kang K, Hube B, Woo PC, Sommer MOA, Panagiotou G.	Microbiome	10.1186/s40168-020-00899-6	2020
	Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization.	Jin X, Yu FB, Yan J, Weakley AM, Dubinkina V, Meng X, Pollard KS.	Nat Commun	10.1038/s41467-023-39121-0	2023
Genetics	Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.	Gupta A, Kumar S, Prasoodanan VP, Harish K, Sharma AK, Sharma VK.	Front Microbiol	10.3389/fmicb.2016.00469	2016
Metabolism	Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.	Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.	Sci Rep	10.1038/s41598-017-10369-z	2017
Metabolism	New iron acquisition system in Bacteroidetes.	Manfredi P, Lauber F, Renzi F, Hack K, Hess E, Cornelis GR.	Infect Immun	10.1128/iai.02042-14	2015
Genetics	The Primary Research on the Gut Microbes in KKAy Mice.	Li Y, Han L, Xu M, Guo J, Feng M, Wang X.	Indian J Microbiol	10.1007/s12088-013-0410-3	2014
Metabolism	Slimy partners: the mucus barrier and gut microbiome in ulcerative colitis.	Fang J, Wang H, Zhou Y, Zhang H, Zhou H, Zhang X.	Exp Mol Med	10.1038/s12276-021-00617-8	2021
	The Glutaminase-Dependent Acid Resistance System: Qualitative and Quantitative Assays and Analysis of Its Distribution in Enteric Bacteria.	Pennacchietti E, D'Alonzo C, Freddi L, Occhialini A, De Biase D.	Front Microbiol	10.3389/fmicb.2018.02869	2018
	Development of an in vitro Model of Human Gut Microbiota for Screening the Reciprocal Interactions With Antibiotics, Drugs, and Xenobiotics.	El Houari A, Ecale F, Mercier A, Crapart S, Laparre J, Soulard B, Ramnath M, Berjeaud JM, Rodier MH, Crepin A.	Front Microbiol	10.3389/fmicb.2022.828359	2022
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
	Characterization and evolutionary implications of the triad Asp-Xxx-Glu in group II phosphopantetheinyl transferases.	Wang YY, Li YD, Liu JB, Ran XX, Guo YY, Ren NN, Chen X, Jiang H, Li YQ.	PLoS One	10.1371/journal.pone.0103031	2014
	Spinal fluid IgG antibodies from patients with demyelinating diseases bind multiple sclerosis-associated bacteria.	Eckman E, Laman JD, Fischer KF, Lopansri B, Martins TB, Hill HR, Kriesel JD.	J Mol Med (Berl)	10.1007/s00109-021-02085-z	2021
Metabolism	Microbiota regulate innate immune signaling and protective immunity against cancer.	Xing C, Wang M, Ajibade AA, Tan P, Fu C, Chen L, Zhu M, Hao ZZ, Chu J, Yu X, Yin B, Zhu J, Shen WJ, Duan T, Wang HY, Wang RF.	Cell Host Microbe	10.1016/j.chom.2021.03.016	2021
	Odoribacter splanchnicus-derived extracellular vesicles alleviate inflammatory bowel disease by modulating gastrointestinal inflammation and intestinal barrier function via the NLRP3 inflammasome suppression.	Zhuang J, Zhuang Z, Chen B, Yang Y, Chen H, Guan G.	Mol Med	10.1186/s10020-025-01063-2	2025
	Differences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus.	Nayman EI, Schwartz BA, Polmann M, Gumabong AC, Nieuwdorp M, Cickovski T, Mathee K.	Sci Rep	10.1038/s41598-024-54769-4	2024
Genetics	Complete genome sequence of Odoribacter splanchnicus type strain (1651/6).	Goker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Brambilla EM, Rohde M, Detter JC, Woyke T, Bristow J, Markowitz V, Hugenholtz P, Eisen JA, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.1714269	2011
Metabolism	Formation of a dipeptidyl arylamidase by Bacteroides splanchnicus NCTC 10825 with specificities towards glycylprolyl-x and valylalanine-x substrates.	Macfarlane S, Macfarlane GT	J Med Microbiol	10.1099/00222615-46-7-547	1997
Phylogeny	[A new butyric acid-producing bacteroides species: B. splanchnicus n. sp. (author's transl)].	Werner H, Rintelen G, Kunstek-Santos H	Zentralbl Bakteriol Orig A		1975
	Characterization and description of Gabonibacter chumensis sp. nov., isolated from feces of a patient with non-small cell lung cancer treated with immunotherapy.	Diop K, Pidgeon R, Diop A, Benlaifaoui M, Belkaid W, Malo J, Bernet E, Veyrier F, Jacq M, Brun Y, Elkrief A, Castagner B, Routy B, Richard C.	Arch Microbiol	10.1007/s00203-023-03671-0	2023
	Taxonogenomics of Culturomica massiliensis gen. nov., sp. nov., and Emergencia timonensis gen. nov., sp. nov. new bacteria isolated from human stool microbiota.	Hamame A, Magdy Wasfy R, Lo CI, Fenollar F, Raoult D, Fournier PE, Houhamdi L.	Sci Rep	10.1038/s41598-023-35443-7	2023
Phylogeny	Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces.	Sakamoto M, Takagaki A, Matsumoto K, Kato Y, Goto K, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.007674-0	2009

References

#9023	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20712
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47264	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 21054 A
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Odoribacter splanchnicus (DSM 20712, ATCC 29572, CCUG 21054)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media