Name: Porphyromonas gulae DSM 15663
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12507

Type strain:

Species: Porphyromonas gulae

Culture col. no.: DSM 15663, ATCC 51700, NCTC 13180, CCUG 47701, JCM 13865, Loup 1

Strain history: CCUG 47701 <-- NCTC 13180 <-- ATCC 51700 <-- C. Mouton strain Loup 1.

NCBI tax ID(s): 1122972 (strain), 111105 (species)

SI-ID 43130

ATCC 51700, NCTC 13180, CCUG 47701, DSM 15663, JCM 13865

Special Collections

Other strains from Porphyromonas gulae

Section

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Porphyromonas gulae DSM 15663 is an anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from wolf gingival sulcus.

Gram-negative
anaerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Porphyromonadaceae*
	Genus	*Porphyromonas*
	Species	**Porphyromonas gulae**
	Full Scientific Name (LPSN)	Porphyromonas gulae Fournier et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %94.737
[Ref.: #125439]	Gram stain	negative Confidence in %99.9

[Ref.: #6018]	Incubation period	1-2 days

[Ref.: #57825]	Incubation period	6 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6018]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #6018]

Culture medium growth

[Ref.: #6018]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6018]

Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6018]

Culture medium growth

[Ref.: #6018]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6018]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6018]	growth	37 °C
[Ref.: #57825]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6018]	Oxygen tolerance	anaerobe
[Ref.: #57825]	Oxygen tolerance	anaerobe

[Ref.: #125438]	Ability of spore formation	no Confidence in %93.5
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6018]	14642	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	+	-	-	+/-	-	+	-	-	+	-
[Ref.: #6018]	13530	-	+	-	+	-	-	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #6018]	13529	-	-	-	+/-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6018]	Sample type/isolated from	wolf gingival sulcus
[Ref.: #6018]	Geographic location (country and/or sea, region)	Quebec
[Ref.: #6018]	Country	Canada
[Ref.: #6018]	Country ISO 3 Code	CAN
[Ref.: #6018]	Continent	North America

[Ref.: #57825]	Sample type/isolated from	Wolf gingival sulcus
[Ref.: #57825]	Geographic location (country and/or sea, region)	Québec
[Ref.: #57825]	Country	Canada
[Ref.: #57825]	Country ISO 3 Code	CAN
[Ref.: #57825]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Wolf gingival sulcus
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Oral cavity and airways	#Gingiva

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB547663 (>99% sequence identity) for Porphyromonas from Microbeatlas

Aquatic Samples	62
Soil Samples	129
Animal Samples	7310
Plant Samples	45
Total Samples	7546

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6018]	Pathogenicity (animal)	yes
[Ref.: #6018]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Porphyromonas gulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 13865	AB547663	1481	GenBank ENA	111105 tax ID
[Ref.: #6018]	Porphyromonas gulae 16S ribosomal RNA gene, partial sequence	AF208290	1466	GenBank ENA	111105 tax ID
[Ref.: #20218]	Porphyromonas gulae strain ATCC 51700 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY546476	856	GenBank ENA	111105 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Porphyromonas gulae DSM 15663	GCA_000378065	scaffold	GenBank ENA	1122972 tax ID
[Ref.: #66792]	Porphyromonas gulae DSM 15663	1122972.3	wgs	PATRIC	1122972 tax ID	*
[Ref.: #66792]	Porphyromonas gulae DSM 15663	2518645603	draft	JGI IMG/M	1122972 tax ID	*

[Ref.: #6018]	GC-content	51 mol%
[Ref.: #6018]	GC-content	48.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	51 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Porphyromonas gulae DSM 15663 PATRIC: 1122972.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	94.737	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	85.705	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.5	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	92.065	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93.863	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	86.595	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Porphyromonas gulae DSM 15663 NCBI: GCA_000378065
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	84.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	60.7
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.8

Availability in culture collections External links

[Ref.: #6018]

Culture collection no.

DSM 15663, ATCC 51700, NCTC 13180, CCUG 47701, JCM 13865, Loup 1

[Ref.: #81726]

SI-ID 43130

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Porphyromonas gulae Has Virulence and Immunological Characteristics Similar to Those of the Human Periodontal Pathogen Porphyromonas gingivalis.	Lenzo JC, O'Brien-Simpson NM, Orth RK, Mitchell HL, Dashper SG, Reynolds EC	Infect Immun	10.1128/IAI.01500-15	2016	*
Enzymology	Purification and characterization of a novel secondary fimbrial protein from Porphyromonas gulae.	Oishi Y, Watanabe K, Kumada H, Ishikawa E, Hamada N	J Oral Microbiol	10.3402/jom.v4i0.19076	2012	*
Phylogeny	Molecular and antigenic similarities of the fimbrial major components between Porphyromonas gulae and P. gingivalis.	Hamada N, Takahashi Y, Watanabe K, Kumada H, Oishi Y, Umemoto T	Vet Microbiol	10.1016/j.vetmic.2007.09.014	2007	*
Phylogeny	Porphyromonas gulae sp. nov., an anaerobic, gram-negative coccobacillus from the gingival sulcus of various animal hosts.	Fournier D, Mouton C, Lapierre P, Kato T, Okuda K, Menard C	Int J Syst Evol Microbiol	10.1099/00207713-51-3-1179	2001	*

References

#6018

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15663

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#57825 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47701

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43130.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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