Name: Paludibacter propionicigenes DSM 17365
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12496

Type strain:

Species: Paludibacter propionicigenes

Culture col. no.: DSM 17365, JCM 13257, CCUG 53888, WB 4

Strain history: A. Ueki WB4.

NCBI tax ID(s): 694427 (strain), 185300 (species)

SI-ID 289869

DSM 17365, JCM 13257, CCUG 53888

Section

Paludibacter propionicigenes DSM 17365 is an anaerobe, chemoorganotroph, mesophilic bacterium that was isolated from rice plant residue.

Gram-negative
rod-shaped
anaerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Paludibacteraceae*
	Genus	*Paludibacter*
	Species	**Paludibacter propionicigenes**
	Full Scientific Name (LPSN)	Paludibacter propionicigenes Ueki et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31612]	Gram stain	negative
[Ref.: #27900]	Gram stain	negative

[Ref.: #31612]	Cell length	1.3-1.7 µm
[Ref.: #27900]	Cell length	1.3-1.7 µm

[Ref.: #31612]	Cell width	0.5-0.6 µm
[Ref.: #27900]	Cell width	0.5-0.6 µm

[Ref.: #31612]	Cell shape	rod-shaped
[Ref.: #27900]	Cell shape	rod-shaped

[Ref.: #31612]	Motility	no
[Ref.: #27900]	Motility	no

[Ref.: #6835]	Type of hemolysis	gamma
[Ref.: #6835]	Incubation period	3-7 days

[Ref.: #31612]

Pigment production

yes

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6835]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #6835]

Culture medium growth

[Ref.: #6835]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6835]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6835]	growth	30 °C
[Ref.: #27900]	optimum	30 °C
[Ref.: #27900]	growth	15-35 °C
[Ref.: #31612]	growth	15-35 °C
[Ref.: #31612]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #6835]	Temperature range	mesophilic
[Ref.: #27900]	Temperature range	mesophilic
[Ref.: #31612]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

		pH
[Ref.: #31612]	optimum	6.6
[Ref.: #27900]	optimum	6.6
[Ref.: #31612]	growth	5-7.6
[Ref.: #27900]	growth	5.0-7.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6835]	Oxygen tolerance	anaerobe
[Ref.: #31612]	Oxygen tolerance	anaerobe
[Ref.: #27900]	Oxygen tolerance	obligate anaerobe

[Ref.: #27900]

Nutrition type

chemoorganotroph

[Ref.: #31612]	Ability of spore formation	no
[Ref.: #27900]	Ability of spore formation	no

	Salt		Salt conc.
[Ref.: #31612]	NaCl	growth	0-0.5	%
[Ref.: #31612]	NaCl	optimum	0-0.5	%
[Ref.: #27900]	NaCl	growth	0-0.5	%(w/v)

[Ref.: #31612]	Observation	aggregates in chains
[Ref.: #27900]	Observation	growth in presence of bile salts
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31612]	arabinose ChEBI	+	carbon source
[Ref.: #27900]	arabinose ChEBI	+	growth
[Ref.: #27900]	arabinose ChEBI	+	builds acid from
[Ref.: #31612]	cellobiose ChEBI	+	carbon source
[Ref.: #27900]	cellobiose ChEBI	+	growth
[Ref.: #27900]	cellobiose ChEBI	+	builds acid from
[Ref.: #27900]	cellulose ChEBI	-	growth
[Ref.: #27900]	cellulose ChEBI	-	degradation
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #27900]	esculin ChEBI	+	hydrolysis
[Ref.: #27900]	ethanol ChEBI	-	growth
[Ref.: #31612]	fructose ChEBI	+	carbon source
[Ref.: #27900]	fructose ChEBI	+	growth
[Ref.: #27900]	fructose ChEBI	+	builds acid from
[Ref.: #27900]	fumarate ChEBI	-	growth
[Ref.: #27900]	galactitol ChEBI	-	growth
[Ref.: #31612]	galactose ChEBI	+	carbon source
[Ref.: #27900]	galactose ChEBI	+	growth
[Ref.: #27900]	galactose ChEBI	+	builds acid from
[Ref.: #27900]	gelatin ChEBI	-
[Ref.: #31612]	glucose ChEBI	+	carbon source
[Ref.: #27900]	glucose ChEBI	+	growth
[Ref.: #27900]	glucose ChEBI	+	builds acid from
[Ref.: #27900]	glycerol ChEBI	-	growth
[Ref.: #31612]	glycogen ChEBI	+	carbon source
[Ref.: #27900]	glycogen ChEBI	+	growth
[Ref.: #27900]	glycogen ChEBI	+	builds acid from
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #27900]	lactate ChEBI	-	growth
[Ref.: #27900]	lactose ChEBI	-	growth
[Ref.: #27900]	malate ChEBI	-	growth
[Ref.: #31612]	maltose ChEBI	+	carbon source
[Ref.: #27900]	maltose ChEBI	+	growth
[Ref.: #27900]	maltose ChEBI	+	builds acid from
[Ref.: #27900]	mannitol ChEBI	-	growth
[Ref.: #31612]	mannose ChEBI	+	carbon source
[Ref.: #27900]	mannose ChEBI	+	growth
[Ref.: #27900]	mannose ChEBI	+	builds acid from
[Ref.: #27900]	melezitose ChEBI	-	growth
[Ref.: #31612]	melibiose ChEBI	+	carbon source
[Ref.: #27900]	melibiose ChEBI	+	growth
[Ref.: #27900]	melibiose ChEBI	+	builds acid from
[Ref.: #27900]	myo-inositol ChEBI	-	growth
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #27900]	pyruvate ChEBI	-	growth
[Ref.: #27900]	raffinose ChEBI	-	growth
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #27900]	rhamnose ChEBI	-	growth
[Ref.: #27900]	ribose ChEBI	-	growth
[Ref.: #27900]	salicin ChEBI	-	growth
[Ref.: #27900]	sorbitol ChEBI	-	growth
[Ref.: #27900]	sorbose ChEBI	-	growth
[Ref.: #27900]	starch ChEBI	+	growth
[Ref.: #27900]	starch ChEBI	+	builds acid from
[Ref.: #27900]	succinate ChEBI	-	growth
[Ref.: #27900]	sucrose ChEBI	-	growth
[Ref.: #27900]	trehalose ChEBI	-	growth
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #27900]	xylan ChEBI	-	growth
[Ref.: #31612]	xylose ChEBI	+	carbon source
[Ref.: #27900]	xylose ChEBI	+	growth
[Ref.: #27900]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #27900]	acetate ChEBI	yes
[Ref.: #27900]	hydrogen sulfide ChEBI	no
[Ref.: #27900]	indole ChEBI	no
[Ref.: #27900]	propionate ChEBI	yes
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #27900]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6835]	12206	-	+/-	+	+	+/-	-	+	+	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #6835]	12205	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	sulfate reduction	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoprenoid biosynthesis	73.08	19 of 26
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	vitamin B1 metabolism	46.15	6 of 13
[Ref.: #66794]	oxidative phosphorylation	45.05	41 of 91
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	arginine metabolism	41.67	10 of 24
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6835]	Sample type/isolated from	rice plant residue
[Ref.: #6835]	Geographic location (country and/or sea, region)	Yamagata
[Ref.: #6835]	Country	Japan
[Ref.: #6835]	Country ISO 3 Code	JPN
[Ref.: #6835]	Continent	Asia
[Ref.: #6835]	Geographic location	38.2500°/140.3400°

[Ref.: #27900]	Sample type/isolated from	rice plant residue (rice straw) sample collected from irrigated rice field soil in the Shonai Brach of the Yamagata Agricultural Experimental Station (Fujishima-machi, Yamagata)
[Ref.: #27900]	Geographic location (country and/or sea, region)	Japan
[Ref.: #27900]	Country	Japan
[Ref.: #27900]	Country ISO 3 Code	JPN
[Ref.: #27900]	Continent	Asia

[Ref.: #60057]	Sample type/isolated from	Soil,rice plant residue in anoxic rice field
[Ref.: #60057]	Country	Japan
[Ref.: #60057]	Country ISO 3 Code	JPN
[Ref.: #60057]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rice plant residue in anoxic rice-field soil
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB910740 (>99% sequence identity) for Paludibacter propionicigenes subclade from Microbeatlas

Aquatic Samples	3218
Soil Samples	846
Animal Samples	18145
Plant Samples	379
Total Samples	22588

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6835]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6835]	Paludibacter propionicigenes gene for 16S ribosomal RNA, partial sequence	AB078842	1447	ENA	694427 tax ID
[Ref.: #20218]	Paludibacter propionicigenes gene for 16S ribosomal RNA, partial sequence	AB910740	1489	ENA	185300 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paludibacter propionicigenes WB4	GCA_000183135	complete	GenBank	694427 tax ID
[Ref.: #66792]	Paludibacter propionicigenes WB4, DSM 17365	649633080	complete	JGI IMG/M	694427 tax ID	*

[Ref.: #31612]	GC-content	39.3 mol%
[Ref.: #27900]	GC-content	39.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6835]

Culture collection no.

DSM 17365, JCM 13257, CCUG 53888, WB 4

[Ref.: #81715]

SI-ID 289869

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Paludibacter propionicigenes type strain (WB4).	Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla E, Rohde M, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.1503846	2011	*
Phylogeny	Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan.	Ueki A, Akasaka H, Suzuki D, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.63896-0	2006	*

References

#6835

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#27900

IJSEM 39 2006 ( DOI 10.1099/ijs.0.63896-0 , PubMed 16403864 )

#31612

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27900 (see below)

#60057 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53888

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81715

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289869.1 )

#27900

IJSEM 39 2006 ( DOI 10.1099/ijs.0.63896-0 , PubMed 16403864 )

* These data were automatically processed and therefore are not curated

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Search for species Paludibacter propionicigenes in external resources:
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