Name: Sorangium cellulosum So ce56
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12490

Type strain:

Species: Sorangium cellulosum

Strain Designation: So ce56

Culture col. no.: DSM 53796

Strain history: <- H. Reichenbach, Gesellschaft für Biotechnologische Forschung, Braunschweig, Germany; So ce56

NCBI tax ID(s): 448385 (strain), 56 (species)

SI-ID 400457

DSM 53796

Other strains from Sorangium cellulosum

Section

Sorangium cellulosum So ce56 is a mesophilic bacterium that was isolated from Soil with plant residues beneath Eugenia caryophyllata.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Polyangiaceae*
	Genus	*Sorangium*
	Species	**Sorangium cellulosum**
	Full Scientific Name (LPSN)	Sorangium cellulosum (Brockman 1989 ex Imshenetski and Solntseva 1936) Reichenbach 2007

Synonym

Polyangium cellulosum

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #17230]

Caption:

fruiting bodies on agar medium 9

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

VY/2 AGAR (DSMZ Medium 9)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17230]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17230]	Name of produced compound	cytochrome P450
[Ref.: #17230]	Name of produced compound	fatty acid hydroxylase CYP109D

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43355]		cellulose ChEBI	+	degradation
[Ref.: #43355]		cellulose ChEBI	+	carbon source

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	alanine metabolism	89.66	26 of 29
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	methionine metabolism	88.46	23 of 26
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	d-xylose degradation	81.82	9 of 11
[Ref.: #66794]	lipid metabolism	80.65	25 of 31
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	non-pathway related	78.95	30 of 38
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	nitrate assimilation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	catecholamine biosynthesis	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	polyamine pathway	60.87	14 of 23
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	ascorbate metabolism	59.09	13 of 22
[Ref.: #66794]	benzoyl-CoA degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	chlorophyll metabolism	50	9 of 18
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17230]	Sample type/isolated from	Soil with plant residues beneath Eugenia caryophyllata
[Ref.: #17230]	Host species	Eugenia caryophyllata
[Ref.: #17230]	Geographic location (country and/or sea, region)	near Cipajung
[Ref.: #17230]	Country	Indonesia
[Ref.: #17230]	Country ISO 3 Code	IDN
[Ref.: #17230]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ316014 (>99% sequence identity) for Sorangium cellulosum subclade from Microbeatlas

Aquatic Samples	2417
Soil Samples	8839
Animal Samples	545
Plant Samples	2699
Total Samples	14500

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17230]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17230]	Polyangium cellulosum 16S rRNA gene, strain So ce56	AJ316014	1519	ENA	448385 tax ID

[Ref.: #43355]

GC-content

71.38 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #17230]

Culture collection no.

DSM 53796

[Ref.: #81709]

SI-ID 400457

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Structural insights into oxidation of medium-chain fatty acids and flavanone by myxobacterial cytochrome P450 CYP267B1.	Jozwik IK, Litzenburger M, Khatri Y, Schifrin A, Girhard M, Urlacher V, Thunnissen AWH, Bernhardt R	Biochem J	10.1042/BCJ20180402	2018	*
Metabolism	Structure-Based Engineering of Steroidogenic CYP260A1 for Stereo- and Regioselective Hydroxylation of Progesterone.	Khatri Y, Jozwik IK, Ringle M, Ionescu IA, Litzenburger M, Hutter MC, Thunnissen AWH, Bernhardt R	ACS Chem Biol	10.1021/acschembio.8b00026	2018	*
Enzymology	CYP260B1 acts as 9alpha-hydroxylase for 11-deoxycorticosterone.	Litzenburger M, Bernhardt R	Steroids	10.1016/j.steroids.2017.08.006	2017	*
Metabolism	Structural characterization of CYP260A1 from Sorangium cellulosum to investigate the 1alpha-hydroxylation of a mineralocorticoid.	Khatri Y, Carius Y, Ringle M, Lancaster CR, Bernhardt R	FEBS Lett	10.1002/1873-3468.12479	2016	*
Enzymology	Scrutiny of electrochemically-driven electrocatalysis of C-19 steroid 1alpha-hydroxylase (CYP260A1) from Sorangium cellulosum So ce56.	Kuzikov AV, Masamrekh RA, Khatri Y, Zavialova MG, Bernhardt R, Archakov AI, Shumyantseva VV	Anal Biochem	10.1016/j.ab.2016.08.016	2016	*
Metabolism	A single terpene synthase is responsible for a wide variety of sesquiterpenes in Sorangium cellulosum Soce56.	Schifrin A, Khatri Y, Kirsch P, Thiel V, Schulz S, Bernhardt R	Org Biomol Chem	10.1039/c6ob00130k	2016	*
Enzymology	CYP267A1 and CYP267B1 from Sorangium cellulosum So ce56 are Highly Versatile Drug Metabolizers.	Kern F, Khatri Y, Litzenburger M, Bernhardt R	Drug Metab Dispos	10.1124/dmd.115.068486	2016	*
Metabolism	Selective oxidation of carotenoid-derived aroma compounds by CYP260B1 and CYP267B1 from Sorangium cellulosum So ce56.	Litzenburger M, Bernhardt R	Appl Microbiol Biotechnol	10.1007/s00253-015-7269-7	2016	*
Metabolism	Substrate Hunting for the Myxobacterial CYP260A1 Revealed New 1alpha-Hydroxylated Products from C-19 Steroids.	Khatri Y, Ringle M, Lisurek M, von Kries JP, Zapp J, Bernhardt R	Chembiochem	10.1002/cbic.201500420	2015	*
Metabolism	New Sesquiterpene Oxidations with CYP260A1 and CYP264B1 from Sorangium cellulosum So ce56.	Schifrin A, Litzenburger M, Ringle M, Ly TT, Bernhardt R	Chembiochem	10.1002/cbic.201500417	2015	*
Metabolism	Highly Efficient CYP167A1 (EpoK) dependent Epothilone B Formation and Production of 7-Ketone Epothilone D as a New Epothilone Derivative.	Kern F, Dier TK, Khatri Y, Ewen KM, Jacquot JP, Volmer DA, Bernhardt R	Sci Rep	10.1038/srep14881	2015	*
Phylogeny	30S Subunit-dependent activation of the Sorangium cellulosum So ce56 aminoglycoside resistance-conferring 16S rRNA methyltransferase Kmr.	Savic M, Sunita S, Zelinskaya N, Desai PM, Macmaster R, Vinal K, Conn GL	Antimicrob Agents Chemother	10.1128/AAC.00056-15	2015	*
Metabolism	Conversions of tricyclic antidepressants and antipsychotics with selected P450s from Sorangium cellulosum So ce56.	Litzenburger M, Kern F, Khatri Y, Bernhardt R	Drug Metab Dispos	10.1124/dmd.114.061937	2014	*
Metabolism	Characterization of the gene cluster CYP264B1-geoA from Sorangium cellulosum So ce56: biosynthesis of (+)-eremophilene and its hydroxylation.	Schifrin A, Ly TT, Gunnewich N, Zapp J, Thiel V, Schulz S, Hannemann F, Khatri Y, Bernhardt R	Chembiochem	10.1002/cbic.201402443	2014	*
Metabolism	A natural heme-signature variant of CYP267A1 from Sorangium cellulosum So ce56 executes diverse omega-hydroxylation.	Khatri Y, Hannemann F, Girhard M, Kappl R, Hutter M, Urlacher VB, Bernhardt R	FEBS J	10.1111/febs.13104	2014	*
Biotechnology	Novel family members of CYP109 from Sorangium cellulosum So ce56 exhibit characteristic biochemical and biophysical properties.	Khatri Y, Hannemann F, Girhard M, Kappl R, Meme A, Ringle M, Janocha S, Leize-Wagner E, Urlacher VB, Bernhardt R	Biotechnol Appl Biochem	10.1002/bab.1087	2013	*
Metabolism	Application of a new versatile electron transfer system for cytochrome P450-based Escherichia coli whole-cell bioconversions.	Ringle M, Khatri Y, Zapp J, Hannemann F, Bernhardt R	Appl Microbiol Biotechnol	10.1007/s00253-012-4612-0	2012	*
Metabolism	CYP264B1 from Sorangium cellulosum So ce56: a fascinating norisoprenoid and sesquiterpene hydroxylase.	Ly TT, Khatri Y, Zapp J, Hutter MC, Bernhardt R	Appl Microbiol Biotechnol	10.1007/s00253-011-3727-z	2012	*
Metabolism	Functional characterization of Fdx1: evidence for an evolutionary relationship between P450-type and ISC-type ferredoxins.	Ewen KM, Hannemann F, Iametti S, Morleo A, Bernhardt R	J Mol Biol	10.1016/j.jmb.2011.09.010	2011	*
Enzymology	New feruloyl esterases to access phenolic acids from grass biomass.	Wu M, Abokitse K, Grosse S, Leisch H, Lau PC	Appl Biochem Biotechnol	10.1007/s12010-011-9359-z	2011	*
Genetics	Investigation of cytochromes P450 in myxobacteria: excavation of cytochromes P450 from the genome of Sorangium cellulosum So ce56.	Khatri Y, Hannemann F, Perlova O, Muller R, Bernhardt R	FEBS Lett	10.1016/j.febslet.2011.04.035	2011	*
Metabolism	Unusual outer membrane lipid composition of the gram-negative, lipopolysaccharide-lacking myxobacterium Sorangium cellulosum So ce56.	Keck M, Gisch N, Moll H, Vorholter FJ, Gerth K, Kahmann U, Lissel M, Lindner B, Niehaus K, Holst O	J Biol Chem	10.1074/jbc.M110.194209	2011	*
Metabolism	The CYPome of Sorangium cellulosum So ce56 and identification of CYP109D1 as a new fatty acid hydroxylase.	Khatri Y, Hannemann F, Ewen KM, Pistorius D, Perlova O, Kagawa N, Brachmann AO, Muller R, Bernhardt R	Chem Biol	10.1016/j.chembiol.2010.10.010	2010	*
Enzymology	Characterization and engineering of a novel pyrroloquinoline quinone dependent glucose dehydrogenase from Sorangium cellulosum So ce56.	Hofer M, Bonsch K, Greiner-Stoffele T, Ballschmiter M	Mol Biotechnol	10.1007/s12033-010-9339-5	2011	*
Metabolism	Regioselective hydroxylation of norisoprenoids by CYP109D1 from Sorangium cellulosum So ce56.	Khatri Y, Girhard M, Romankiewicz A, Ringle M, Hannemann F, Urlacher VB, Hutter MC, Bernhardt R	Appl Microbiol Biotechnol	10.1007/s00253-010-2756-3	2010	*
Genetics	Genome mining in Sorangium cellulosum So ce56: identification and characterization of the homologous electron transfer proteins of a myxobacterial cytochrome P450.	Ewen KM, Hannemann F, Khatri Y, Perlova O, Kappl R, Krug D, Huttermann J, Muller R, Bernhardt R	J Biol Chem	10.1074/jbc.M109.021717	2009	*
Metabolism	Investigation of the central carbon metabolism of Sorangium cellulosum: metabolic network reconstruction and quantification of pathway fluxes.	Bolten CJ, Heinzle E, Muller R, Wittmann C	J Microbiol Biotechnol	8179	2009	*
Metabolism	Establishment of a high content assay for the identification and characterisation of bioactivities in crude bacterial extracts that interfere with the eukaryotic cell cycle.	Jensen NA, Gerth K, Grotjohann T, Kapp D, Keck M, Niehaus K	J Biotechnol	10.1016/j.jbiotec.2008.12.002	2008	*
Metabolism	NtcA: a negative regulator of secondary metabolite biosynthesis in Sorangium cellulosum.	Rachid S, Gerth K, Muller R	J Biotechnol	10.1016/j.jbiotec.2008.10.010	2008	*
Metabolism	Mutation in the rel gene of Sorangium cellulosum affects morphological and physiological differentiation.	Knauber T, Doss SD, Gerth K, Perlova O, Muller R, Treuner-Lange A	Mol Microbiol	10.1111/j.1365-2958.2008.06285.x	2008	*
Genetics	Complete genome sequence of the myxobacterium Sorangium cellulosum.	Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Ruckert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorholter FJ, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Blocker H, Puhler A, Muller R	Nat Biotechnol	10.1038/nbt1354	2007	*
Metabolism	Deciphering regulatory mechanisms for secondary metabolite production in the myxobacterium Sorangium cellulosum So ce56.	Rachid S, Gerth K, Kochems I, Muller R	Mol Microbiol	10.1111/j.1365-2958.2007.05627.x	2007	*
Metabolism	Metabolic engineering of Pseudomonas putida for methylmalonyl-CoA biosynthesis to enable complex heterologous secondary metabolite formation.	Gross F, Ring MW, Perlova O, Fu J, Schneider S, Gerth K, Kuhlmann S, Stewart AF, Zhang Y, Muller R	Chem Biol	10.1016/j.chembiol.2006.09.014	2006	*
Metabolism	Establishment of a real-time PCR protocol for expression studies of secondary metabolite biosynthetic gene clusters in the G/C-rich myxobacterium Sorangium cellulosum So ce56.	Kegler C, Gerth K, Muller R	J Biotechnol	10.1016/j.jbiotec.2005.10.007	2005	*
Cultivation	Development of simple media which allow investigations into the global regulation of chivosazol biosynthesis with Sorangium cellulosum So ce56.	Muller R, Gerth K	J Biotechnol	10.1016/j.jbiotec.2005.10.012	2006	*
Metabolism	Identification and analysis of the chivosazol biosynthetic gene cluster from the myxobacterial model strain Sorangium cellulosum So ce56.	Perlova O, Gerth K, Kaiser O, Hans A, Muller R	J Biotechnol	10.1016/j.jbiotec.2005.10.011	2005	*
Metabolism	Novel insights into siderophore formation in myxobacteria.	Gaitatzis N, Kunze B, Muller R	Chembiochem	10.1002/cbic.200400206	2005	*
Metabolism	Critical variations of conjugational DNA transfer into secondary metabolite multiproducing Sorangium cellulosum strains So ce12 and So ce56: development of a mariner-based transposon mutagenesis system.	Kopp M, Irschik H, Gross F, Perlova O, Sandmann A, Gerth K, Muller R	J Biotechnol	10.1016/j.jbiotec.2003.09.013	2004	*
Metabolism	Myxobacteria: proficient producers of novel natural products with various biological activities--past and future biotechnological aspects with the focus on the genus Sorangium.	Gerth K, Pradella S, Perlova O, Beyer S, Muller R	J Biotechnol	10.1016/j.jbiotec.2003.07.015	2003	*
Genetics	Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.	Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Puhler A, Meyer F	J Biotechnol	10.1016/j.jbiotec.2003.08.008	2003	*
Phylogeny	Characterisation, genome size and genetic manipulation of the myxobacterium Sorangium cellulosum So ce56.	Pradella S, Hans A, Sproer C, Reichenbach H, Gerth K, Beyer S	Arch Microbiol	10.1007/s00203-002-0479-2	2002	*

References

#17230

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 53796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43355

Susanne Schneiker, Olena Perlova, Olaf Kaiser, Klaus Gerth, Aysel Alici, Matthias O Altmeyer, Daniela Bartels, Thomas Bekel, Stefan Beyer, Edna Bode, Helge B Bode, Christoph J Bolten, Jomuna V Choudhuri, Sabrina Doss, Yasser A Elnakady, Bettina Frank, Lars Gaigalat, Alexander Goesmann, Carolin Groeger, Frank Gross, Lars Jelsbak, Lotte Jelsbak, Joern Kalinowski, Carsten Kegler, Tina Knauber, Sebastian Konietzny, Maren Kopp, Lutz Krause, Daniel Krug, Bukhard Linke, Taifo Mahmud, Rosa Martinez-Arias, Alice C McHardy, Michelle Merai, Folker Meyer, Sascha Mormann, Jose Munoz-Dorado, Juana Perez, Silke Pradella, Shwan Rachid, Guenter Raddatz, Frank Rosenau, Christian Rueckert, Florenz Sasse, Maren Scharfe, Stephan C Schuster, Garret Suen, Anke Treuner-Lange, Gregory J Velicer, Frank-Joerg Vorhoelter, Kira J Weissman, Roy D Welch, Silke C Wenzel, David E Whitworth, Susanne Wilhelm, Christoph Wittmann, Helmut Bloecker, Alfred Puehler, Rolf Mueller: Complete genome sequence of the myxobacterium Sorangium cellulosum. Nat. Biotechnol. 25: 1281 - 1289 2007 ( DOI 10.1038/nbt1354 , PubMed 17965706 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81709

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400457.1 )

* These data were automatically processed and therefore are not curated

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