Metabacillus niabensis (DSM 17723, CIP 109816, KACC 11279)

Name: Metabacillus niabensis (DSM 17723, CIP 109816, KACC 11279)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1243

Type strain

Strain Designation 4T19

Culture col. no. DSM 17723 CIP 109816 KACC 11279 4T19 JCM 16399

NCBI tax ID(s) 324854

Special Collections DSMZ JCM CIP Literature strains

History DSMZ <- Byung-Yong Kim, 4T19 JCM <-- KACC 11279 <-- H.-Y. Weon 4T19. CIP <- 2008, DSMZ <- B.Y. Kim, KACC, Suwon, Korea: strain 4T19

Links

Metabacillus niabensis 4T19 is a facultative aerobe, spore-forming, Gram-positive bacterium that was isolated from compost for cultivation of mushroom.

spore-forming Gram-positive motile rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309433

BCRC 17829,DSM 17723,KACC 11279,CIP 109816,JCM 16399

@ref 20215

Last LPSN update 2026-05-29 08:25:13

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Metabacillus

Species Metabacillus niabensis

Full scientific name Metabacillus niabensis (Kwon et al. 2007) Patel and Gupta 2020

Synonyms (1)

Bacillus niabensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31749	positive	02-03 µm	0.5-0.7 µm	rod-shaped
121288	positive			rod-shaped

Pigmentation

31749

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6919	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40071	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121288	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6919	positive	growth	30
31749	positive	growth	04-45
31749	positive	optimum	30
40071	positive	growth	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31749	positive	optimum	7
31749	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31749	facultative aerobe
121288	facultative anaerobe
125439	facultative anaerobe	93.141

Spore formation

31749

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31749	NaCl	positive	growth	0-5 %

Observation

@ref	Observation
31749	aggregates in chains
67770	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
31749	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31749	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31749	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31749	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
31749	17632 ChEBI	nitrate	+	reduction
121288	17632 ChEBI	nitrate	+	reduction
121288	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31749	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121288	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31749	catalase	+	1.11.1.6
121288	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
31749	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121288	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
31749	urease	+	3.5.1.5
121288	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121288	-	+	+	+	-	-	-	-	-	-	+	+	-	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121288	not determinedn.d.	-	-	-	+/-	-	-	-	-	-	-	+/-	+/-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+/-	+/-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Engineered	#Food production	#Food
#Host	#Fungi	#Mushroom

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6919	compost for cultivation of mushroom	Suwon	Republic of Korea	KOR	Asia
67770	Cotton-waste composts for mushroom cultivation	Suwon	Republic of Korea	KOR	Asia
121288	Mushroom, cultivation	Suwon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY998119 (>99% sequence identity) for Metabacillus halosaccharovorans from Microbeatlas

Aquatic Samples	69
Soil Samples	464
Animal Samples	265
Plant Samples	19
Total Samples	817

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6919	1	Risk group (German classification) According to TRBA 466
121288	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081316v1 assembly for Metabacillus niabensis DSM 17723	contig	GCA_030813165	324854.15	2926518972	324854	69.5
124043	ASM4265710v1 assembly for Metabacillus niabensis KACC 11279	contig	GCA_042657105			324854	68.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6919	Bacillus niabensis strain 4T19 16S ribosomal RNA gene, partial sequence	AY998119	1478		324854

GC content

@ref	GC-content (mol%)	Method
6919	39.3
31749	35.2
67770	40.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081316v1 assembly for Metabacillus niabensis DSM 17723
NCBI: GCA_030813165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.14	no
125439	gram_stain	BacteriaNetⓘ	positive	49.89	no
125439	motility	BacteriaNetⓘ	yes	64.84	no
125439	spore_formation	BacteriaNetⓘ	yes	65.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Draft genome of Metabacillus niabensis strain 4T19(T) isolated from cotton-waste composts for mushroom cultivation.	Kangale LJ, Levasseur A, Raoult D, Ghigo E, Fournier PE	New Microbes New Infect	10.1016/j.nmni.2021.100894	2021
Phylogeny	Metabacillus arenae sp. nov., isolated from seashore sand.	Fang Q, Wu Q, Huang H, Hu Y, Li C, Mo K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005783	2023
Phylogeny	Bacillus cellulasensis sp. nov., isolated from marine sediment.	Mawlankar R, Thorat MN, Krishnamurthi S, Dastager SG	Arch Microbiol	10.1007/s00203-015-1155-7	2015
Phylogeny	Bacillus endolithicus sp. nov., isolated from pebbles.	Parag B, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.000612	2015
Phylogeny	A heavy metal tolerant novel bacterium, Bacillus malikii sp. nov., isolated from tannery effluent wastewater.	Abbas S, Ahmed I, Kudo T, Iqbal M, Lee YJ, Fujiwara T, Ohkuma M	Antonie Van Leeuwenhoek	10.1007/s10482-015-0584-2	2015
Phylogeny	Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation.	Kwon SW, Lee SY, Kim BY, Weon HY, Kim JB, Go SJ, Lee GB	Int J Syst Evol Microbiol	10.1099/ijs.0.64178-0	2007

References

#6919	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17723
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28023	IJSEM 1909 2007 ( DOI 10.1099/ijs.0.64178-0 , PubMed 17684280 )
#31749	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28023
#40071	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121288	Collection of Institut Pasteur ; Curators of the CIP; CIP 109816
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Metabacillus niabensis (DSM 17723, CIP 109816, KACC 11279)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030813165

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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