Lederbergia ruris (DSM 17057, CIP 109042, LMG 22866)

Name: Lederbergia ruris (DSM 17057, CIP 109042, LMG 22866)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1236

Type strain

Strain Designation MB 1669, R-6760

Culture col. no. DSM 17057 CIP 109042 LMG 22866 MB 1669 R-6760

NCBI tax ID(s) 217495

Special Collections DSMZ CIP Literature strains

Links

Lederbergia ruris MB 1669 is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from raw milk.

spore-forming Gram-positive motile rod-shaped facultative anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 134674

LMG 22866,DSM 17057,CIP 109042

@ref 20215

Last LPSN update 2025-12-16 09:47:03

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Lederbergia

Species Lederbergia ruris

Full scientific name Lederbergia ruris (Heyndrickx et al. 2005) Gupta et al. 2020

Synonyms (1)

Bacillus ruris

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31563	positive	1.5 µm	0.65 µm	rod-shaped
122317	positive			rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6726	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40099	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122317	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6726	positive	growth	30	mesophilic
31563	positive	growth	30-40
31563	positive	optimum	35	mesophilic
40099	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31563	positive	optimum	8.5
31563	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31563	facultative anaerobe
122317	facultative anaerobe

Spore formation

31563

Spore formationyes

Observation

31563

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31563	22599 ChEBI	arabinose	+	carbon source
31563	17057 ChEBI	cellobiose	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31563	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31563	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31563	28260 ChEBI	galactose	+	carbon source
31563	17234 ChEBI	glucose	+	carbon source
31563	28087 ChEBI	glycogen	+	carbon source
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31563	17716 ChEBI	lactose	+	carbon source
31563	17306 ChEBI	maltose	+	carbon source
31563	29864 ChEBI	mannitol	+	carbon source
31563	37684 ChEBI	mannose	+	carbon source
31563	28053 ChEBI	melibiose	+	carbon source
31563	37657 ChEBI	methyl D-glucoside	+	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31563	506227 ChEBI	N-acetylglucosamine	+	carbon source
31563	17632 ChEBI	nitrate	+	reduction
122317	17632 ChEBI	nitrate	+	reduction
122317	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
31563	16634 ChEBI	raffinose	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31563	33942 ChEBI	ribose	+	carbon source
31563	17814 ChEBI	salicin	+	carbon source
31563	17992 ChEBI	sucrose	+	carbon source
31563	27082 ChEBI	trehalose	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31563	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122317	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
122317	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31563	catalase	+	1.11.1.6
122317	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122317	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122317	ornithine decarboxylase	-	4.1.1.17
122317	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122317	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122317	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122317	not determinedn.d.	+/-	-	-	+/-	+/-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	+/-	-	+/-	+/-	-	-	-	+/-	-	-	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6726	raw milk	Belgium	BEL	Europe
122317	Food, Raw milk	Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ535639 (>99% sequence identity) for Lederbergia from Microbeatlas

Aquatic Samples	2
Soil Samples	35
Animal Samples	13
Plant Samples	7
Total Samples	57

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6726	1	Risk group (German classification) According to TRBA 466
122317	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6726	Bacillus ruris partial 16S rRNA gene, type strain R-6760	AJ535639	1423		217495

GC content

31563

GC-content (mol%)39.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus graminis sp. nov., an endophyte isolated from a coastal dune plant.	Bibi F, Chung EJ, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.023820-0	2010
Phylogeny	Bacillus ruris sp. nov., from dairy farms.	Heyndrickx M, Scheldeman P, Forsyth G, Lebbe L, Rodriguez-Diaz M, Logan NA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.63812-0	2005

References

#6726	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17057
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31563	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27853 (see below)
#40099	; Curators of the CIP;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122317	Collection of Institut Pasteur ; Curators of the CIP; CIP 109042
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lederbergia ruris (DSM 17057, CIP 109042, LMG 22866)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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