Name: Fictibacillus gelatini R-13853
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1218

Type strain:

Species: Fictibacillus gelatini

Strain Designation: R-13853

Culture col. no.: DSM 15865, LMG 21880

Strain history: <- D. Janssens, LMG <- E. De Clerck; R-13853

NCBI tax ID(s): 1121091 (strain), 225985 (species)

SI-ID 97803

LMG 21880, DSM 15865

Section

Fictibacillus gelatini R-13853 is an aerobe, spore-forming, thermophilic bacterium that was isolated from gelatin.

Gram-variable
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Fictibacillus*
	Species	**Fictibacillus gelatini**
	Full Scientific Name (LPSN)	Fictibacillus gelatini (De Clerck et al. 2004) Glaeser et al. 2013

Synonym

Bacillus gelatini

Information on morphological and physiological properties Morphology

[Ref.: #30118]	Gram stain	variable
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30118]	Cell length	7 µm

[Ref.: #30118]	Cell width	0.7 µm

[Ref.: #30118]	Cell shape	rod-shaped

[Ref.: #30118]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.679

[Ref.: #30118]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6127]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6127]

Culture medium growth

[Ref.: #6127]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6127]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6127]			growth	50 °C
[Ref.: #30118]			optimum	45 °C

[Ref.: #6127]	Temperature range	thermophilic
[Ref.: #30118]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30118]			optimum	6.5
[Ref.: #30118]			growth	4.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30118]

Oxygen tolerance

aerobe

[Ref.: #30118]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30118]		NaCl		optimum	15	%

[Ref.: #30118]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30118]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30118]	cellobiose ChEBI	+	carbon source
[Ref.: #30118]	esculin ChEBI	+	hydrolysis
[Ref.: #30118]	fructose ChEBI	+	carbon source
[Ref.: #30118]	galactose ChEBI	+	carbon source
[Ref.: #30118]	gelatin ChEBI	+	carbon source
[Ref.: #30118]	glucose ChEBI	+	carbon source
[Ref.: #30118]	glycerol ChEBI	+	carbon source
[Ref.: #30118]	maltose ChEBI	+	carbon source
[Ref.: #30118]	mannitol ChEBI	+	carbon source
[Ref.: #30118]	mannose ChEBI	+	carbon source
[Ref.: #30118]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30118]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30118]	ribose ChEBI	+	carbon source
[Ref.: #30118]	trehalose ChEBI	+	carbon source
[Ref.: #30118]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30118]		catalase	+	1.11.1.6
[Ref.: #30118]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6127]	Sample type/isolated from	gelatin
[Ref.: #6127]	Country	Belgium
[Ref.: #6127]	Country ISO 3 Code	BEL
[Ref.: #6127]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ551329 (>99% sequence identity) for Fictibacillus gelatini subclade from Microbeatlas

Aquatic Samples	132
Soil Samples	225
Animal Samples	198
Plant Samples	57
Total Samples	612

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6127]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6127]	Bacillus gelatini partial 16S rRNA gene, type strain LMG 21880T	AJ551329	1485	ENA	225985 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fictibacillus gelatini DSM 15865	GCA_000430745	scaffold	GenBank	1121091 tax ID	*
[Ref.: #66792]	Bacillus gelatini DSM 15865	1121091.3	wgs	PATRIC	1121091 tax ID	*
[Ref.: #66792]	Fictibacillus gelatini DSM 15865	2523533616	draft	JGI IMG/M	1121091 tax ID	*

[Ref.: #30118]

GC-content

41.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fictibacillus gelatini DSM 15865 DSM 15865 NCBI: GCA_000430745.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fictibacillus gelatini DSM 15865 DSM 15865 NCBI: GCA_000430745.1
[Ref.: #69480]	motile	yes	86.773	no
[Ref.: #69480]	flagellated	yes	74.018	no
[Ref.: #69480]	gram-positive	yes	88.914	no
[Ref.: #69480]	anaerobic	no	98.773	yes
[Ref.: #69480]	aerobic	yes	84.936	no
[Ref.: #69480]	halophile	no	87.861	no
[Ref.: #69480]	spore-forming	yes	97.654	no
[Ref.: #69480]	glucose-util	yes	92.099	no
[Ref.: #69480]	thermophile	yes	58.487	yes
[Ref.: #69480]	glucose-ferment	no	93.468	no

Availability in culture collections External links

[Ref.: #6127]

Culture collection no.

DSM 15865, LMG 21880

[Ref.: #70874]

SI-ID 97803

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anoxybacillus contaminans sp. nov. and Bacillus gelatini sp. nov., isolated from contaminated gelatin batches.	De Clerck E, Rodriguez-Diaz M, Vanhoutte T, Heyrman J, Logan NA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.02960-0	2004	*

References

#6127

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15865

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30118

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26473 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70874

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97803.1 )

#26473

IJSEM 941 2004 ( DOI 10.1099/ijs.0.02960-0 , PubMed 15143046 )

* These data were automatically processed and therefore are not curated

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Fictibacillus gelatini DSM 15865 DSM 15865

Fictibacillus gelatini DSM 15865 DSM 15865

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