Name: Neobacillus vireti IDA 3632
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1215

Type strain:

Species: Neobacillus vireti

Strain Designation: IDA 3632, R-15447

Culture col. no.: DSM 15602, CIP 108806, LMG 21834, JCM 21711, IAM 15260, KCTC 13573, NBRC 102452

Strain history: CIP <- 2005, DSMZ <- J. Heyrman: strain R-15447 <- A. Felske: strain IDA 3632

NCBI tax ID(s): 1131730 (strain), 220686 (species)

SI-ID 85494

LMG 21834, DSM 15602, CIP 108806, JCM 21711, NBRC 102452, IAM 15260

Special Collections

Section

When using BacDive for research please cite our paper

Neobacillus vireti IDA 3632 is a facultative anaerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from soil, Drentse A agricultural research area.

colony-forming
Gram-negative
motile
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Neobacillus*
	Species	**Neobacillus vireti**
	Full Scientific Name (LPSN)	Neobacillus vireti (Heyrman et al. 2004) Patel and Gupta 2020

Synonym

Bacillus vireti

Information on morphological and physiological properties Morphology

[Ref.: #23312]	Gram stain	negative
[Ref.: #123855]	Gram stain	positive

[Ref.: #23312]	Cell length	0.6-0.9 µm

[Ref.: #23312]	Motility	yes
[Ref.: #123855]	Motility	yes

[Ref.: #123855]	Cell shape	rod-shaped

[Ref.: #123855]	Hemolysis ability	1

[Ref.: #23312]	Colony size	4 mm
[Ref.: #23312]	Colony color	dark cream
[Ref.: #23312]	Colony shape	circular
[Ref.: #23312]	Incubation period	3 days
[Ref.: #23312]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5922]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5922]

Culture medium growth

[Ref.: #5922]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5922]

Culture medium composition

expand / minimize

[Ref.: #23312]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23312]

Culture medium growth

[Ref.: #38220]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38220]

Culture medium growth

[Ref.: #38220]

Culture medium composition

expand / minimize

[Ref.: #123855]

Culture medium

CIP Medium 72

[Ref.: #123855]

Culture medium growth

[Ref.: #123855]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123855]

Culture medium

CIP Medium 328

[Ref.: #123855]

Culture medium growth

[Ref.: #123855]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5922]		growth	30 °C
[Ref.: #23312]		maximum	40-45 °C
[Ref.: #23312]		optimum	30 °C
[Ref.: #38220]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #123855]		growth	10-37 °C
[Ref.: #123855]	negative	growth	45 °C
[Ref.: #123855]	negative	growth	55 °C

		pH
[Ref.: #23312]	maximum	7.0-7.5
[Ref.: #23312]	minimum	4.0-5.0
[Ref.: #23312]	optimum	7.0-7.5
[Ref.: #123855]	growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23312]	Oxygen tolerance	facultative anaerobe
[Ref.: #123855]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %91.4

[Ref.: #23312]	Spore description	ellispoidal, central, paracentral, sometimes subterminal, may swell sporangia slightly
[Ref.: #23312]	Type of spore	endospore
[Ref.: #23312]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %92.039

	Salt	Tested relation		Salt conc.
[Ref.: #123855]	NaCl		growth	0-6	%
[Ref.: #123855]	NaCl	no	growth	8	%
[Ref.: #123855]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23312]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23312]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23312]	amygdalin ChEBI	-	builds acid from
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	arbutin ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	casein	+	hydrolysis
[Ref.: #23312]	cellobiose ChEBI	-	builds acid from
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	citrate ChEBI	-	assimilation
[Ref.: #123855]	citrate ChEBI	-	carbon source
[Ref.: #23312]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-fructose ChEBI	+	builds acid from
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-fucose ChEBI	-	builds acid from
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #23312]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	D-trehalose ChEBI	+	builds acid from
[Ref.: #23312]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	esculin ChEBI	+	hydrolysis
[Ref.: #123855]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	gelatin ChEBI	+	hydrolysis
[Ref.: #23312]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	gluconate ChEBI	+/-	builds acid from
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	glycerol ChEBI	-	builds acid from
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	glycogen ChEBI	+	builds acid from
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123855]	hippurate ChEBI	+	hydrolysis
[Ref.: #23312]	inulin ChEBI	-	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #23312]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #23312]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	melibiose ChEBI	-	builds acid from
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	methyl alpha-D-glucopyranoside ChEBI	+/-	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	methyl alpha-D-mannoside ChEBI	+/-	builds acid from
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	nitrate ChEBI	+	reduction
[Ref.: #123855]	nitrate ChEBI	+	reduction
[Ref.: #123855]	nitrate ChEBI	+	respiration
[Ref.: #123855]	nitrite ChEBI	+	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	raffinose ChEBI	-	builds acid from
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	salicin ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	starch ChEBI	+	builds acid from
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23312]	turanose ChEBI	-	builds acid from
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23312]	xylitol ChEBI	-	builds acid from
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23312]	acetoin ChEBI	no
[Ref.: #23312]	hydrogen sulfide ChEBI	no
[Ref.: #23312]	indole ChEBI	no
[Ref.: #123855]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23312]	acetoin ChEBI	-
[Ref.: #123855]	acetoin ChEBI	+
[Ref.: #123855]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123855]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123855]	amylase	+
[Ref.: #23312]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23312]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #123855]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123855]	caseinase	+	3.4.21.50
[Ref.: #123855]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #123855]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123855]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123855]	gelatinase	+
[Ref.: #123855]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123855]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #23312]	lysine decarboxylase	-	4.1.1.18
[Ref.: #123855]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #23312]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123855]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123855]	oxidase	-
[Ref.: #123855]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #23312]	tryptophan deaminase	-	4.1.99.1
[Ref.: #123855]	tween esterase	-
[Ref.: #23312]	urease	-	3.5.1.5
[Ref.: #123855]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123855]	11387	not determinedn.d.	+	-	+	-	+	-	-	-	-	+/-	+	+	+	-	+/-	-	+	+	-	-	+	+	-	-	+	-	-	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	+/-	-	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123855]	11472	-	+	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	methionine metabolism	84.62	22 of 26
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	phenol degradation	70	14 of 20
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
[Ref.: #66794]	vitamin B12 metabolism	20.59	7 of 34
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23312]	Sample type/isolated from	soil, Drentse A agricultural research area
[Ref.: #23312]	Geographic location (country and/or sea, region)	Anlooer Diepje brook
[Ref.: #23312]	Country	Netherlands
[Ref.: #23312]	Country ISO 3 Code	NLD
[Ref.: #23312]	Continent	Europe
[Ref.: #23312]	Geographic location	53.0333°/6.6833°

[Ref.: #5922]	Sample type/isolated from	soil
[Ref.: #5922]	Geographic location (country and/or sea, region)	near Anloo
[Ref.: #5922]	Country	Netherlands
[Ref.: #5922]	Country ISO 3 Code	NLD
[Ref.: #5922]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil in the Drentse A agricultural research area along the Anlooër Diepje brook
[Ref.: #67770]	Country	Netherlands
[Ref.: #67770]	Country ISO 3 Code	NLD
[Ref.: #67770]	Continent	Europe

[Ref.: #123855]	Sample type/isolated from	Environment, Soil
[Ref.: #123855]	Country	Netherlands
[Ref.: #123855]	Country ISO 3 Code	NLD
[Ref.: #123855]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ542509 (>99% sequence identity) for Neobacillus from Microbeatlas

Aquatic Samples	4
Soil Samples	72
Animal Samples	4
Plant Samples	5
Total Samples	85

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5922]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123855]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23312]	Bacillus vireti partial 16S rRNA gene, strain LMG 21834	AJ542509	1430	GenBank ENA	1131730 tax ID
[Ref.: #20218]	Bacillus vireti gene for 16S rRNA, partial sequence, strain: NBRC 102452	AB681794	1430	GenBank ENA	1131730 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Neobacillus vireti LMG 21834	GCA_000508325	contig	GenBank ENA	1131730 tax ID
[Ref.: #67770]	Neobacillus vireti DSM 15602	GCA_001026695	scaffold	GenBank ENA	220686 tax ID
[Ref.: #66792]	Bacillus vireti LMG 21834	1131730.3	wgs	PATRIC	1131730 tax ID	*
[Ref.: #66792]	Bacillus vireti strain DSM 15602	220686.9	wgs	PATRIC	220686 tax ID	*
[Ref.: #66792]	Bacillus vireti DSM 15602	2645728032	draft	JGI IMG/M	220686 tax ID	*
[Ref.: #66792]	Bacillus vireti LMG 21834	2558860475	draft	JGI IMG/M	1131730 tax ID	*

[Ref.: #67770]

GC-content

40.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus vireti LMG 21834 PATRIC: 1131730.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	58.177	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.372	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	92.039	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	57.074	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	90.329	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	74.536	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neobacillus vireti DSM 15602 NCBI: GCA_001026695
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	91.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	82.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	79.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	89.5

Availability in culture collections External links

[Ref.: #5922]

Culture collection no.

DSM 15602, CIP 108806, LMG 21834, JCM 21711, IAM 15260, KCTC 13573, NBRC 102452

[Ref.: #70871]

SI-ID 85494

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus cucumis sp. nov. isolated from the rhizosphere of cucumber (Cucumis sativus).	Kampfer P, Busse HJ, Glaeser SP, Kloepper JW, Hu CH, McInroy JA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000831	2015	*
Genetics	High-Quality Genome Sequence of Bacillus vireti DSM 15602T for Setting Up Phylogenomics for the Genomic Taxonomy of Bacillus-Like Bacteria.	Liu GH, Liu B, Wang JP, Che JM, Chen QQ, Chen Z	Genome Announc	10.1128/genomeA.00864-15	2015	*
Phylogeny	Bacillus mesonae sp. nov., isolated from the root of Mesona chinensis.	Liu B, Liu GH, Hu GH, Chen MC	Int J Syst Evol Microbiol	10.1099/ijs.0.059485-0	2014	*
Phylogeny	Bacillus ginsengisoli sp. nov., isolated from soil of a ginseng field.	Nguyen NL, Kim YJ, Hoang VA, Min JW, Liang ZQ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.031740-0	2012	*
Phylogeny	Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands.	Heyrman J, Vanparys B, Logan NA, Balcaen A, Rodriguez-Diaz M, Felske A, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.02723-0	2004	*

References

#5922

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15602

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23312

Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos: Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. IJSEM 54: 47 - 57 2004 ( DOI 10.1099/ijs.0.02723-0 , PubMed 14742458 )

#38220 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70871

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID85494.1 )

#123855 Collection of Institut Pasteur ; Curators of the CIP; CIP 108806

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Neobacillus vireti in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Bacillus vireti LMG 21834

Neobacillus vireti DSM 15602

Change proposal

Change proposal