Neobacillus bataviensis (DSM 15601, CIP 108807, LMG 21833)

Name: Neobacillus bataviensis (DSM 15601, CIP 108807, LMG 21833)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1214

Type strain

Strain Designation IDA 1115, R-16315

Culture col. no. DSM 15601 CIP 108807 LMG 21833 IDA 1115 R-16315 2 more

NCBI tax ID(s) 1117379 220685

Special Collections DSMZ JCM CIP Literature strains

History <- J. Heyrman; R-16315 <- A. Felske; IDA 1115 IAM 15255 <-- LMG 21833 <-- J. Heyrman <-- A. Felske. CIP <- 2005, DSMZ <- J. Heyrman: strain R-16315 <- A. Felske: strain IDA 1115

Links

Neobacillus bataviensis IDA 1115 is a facultative anaerobe, spore-forming, mesophilic prokaryote that forms circular colonies and has a light brown pigmentation.

spore-forming Gram-positive colony-forming pigmented facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 85426

LMG 21833,DSM 15601,CIP 108807,JCM 21706,NBRC 102449,IAM 15255

@ref 20215

Last LPSN update 2025-12-16 09:47:03

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Neobacillus

Species Neobacillus bataviensis

Full scientific name Neobacillus bataviensis (Heyrman et al. 2004) Patel and Gupta 2020

Synonyms (1)

Bacillus bataviensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
23312	positive
23312	variable	0.7-1.2 µm	rod-shaped
116739	positive		rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
23312	cream	circular	TSA
116739

Pigmentation

@ref	Production	Color
23312		light brown

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5901	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23312	Trypticase Soy Agar (TSA)
38241	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116739	CIP Medium 72	Medium recipe at CIP
116739	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5901	positive	growth	30	mesophilic
23312	positive	maximum	50-55	thermophilic
23312	positive	optimum	30	mesophilic
38241	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
116739	positive	growth	10-45
116739	negative	growth	55

Culture pH

@ref	Ability	Type	PH	PH range
23312	positive	maximum	9.5-10.0	alkaliphile
23312	positive	minimum	4.0-6.0	acidophile
23312	positive	optimum	7.0-8.0
116739	positive	growth	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23312	facultative anaerobe
116739	obligate aerobe
125439	obligate aerobe	95.2

Spore formation

@ref	Spore description	Type of spore	Confidence
23312	ellispoidal, may be spherical, central, paracentral, occasionally subterminal, slightly swollen sporangia	endospore
116739
125438			90.098

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116739	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23312	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
23312	17426 ChEBI	5-dehydro-D-gluconate	-	builds acid from
23312	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
23312	18305 ChEBI	arbutin	+/-	builds acid from
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
23312		casein	-	hydrolysis
23312	17057 ChEBI	cellobiose	+	builds acid from
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
23312	16947 ChEBI	citrate	-	assimilation
116739	16947 ChEBI	citrate	-	carbon source
23312	17108 ChEBI	D-arabinose	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23312	18333 ChEBI	D-arabitol	-	builds acid from
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
23312	15824 ChEBI	D-fructose	+	builds acid from
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
23312	28847 ChEBI	D-fucose	-	builds acid from
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
23312	12936 ChEBI	D-galactose	+	builds acid from
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
23312	17634 ChEBI	D-glucose	+	builds acid from
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
23312	62318 ChEBI	D-lyxose	-	builds acid from
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
23312	16899 ChEBI	D-mannitol	+	builds acid from
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
23312	16024 ChEBI	D-mannose	+	builds acid from
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
23312	16988 ChEBI	D-ribose	+/-	builds acid from
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
23312	17924 ChEBI	D-sorbitol	-	builds acid from
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
23312	16443 ChEBI	D-tagatose	-	builds acid from
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23312	16551 ChEBI	D-trehalose	+	builds acid from
23312	65327 ChEBI	D-xylose	-	builds acid from
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
23312	17113 ChEBI	erythritol	-	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23312	4853 ChEBI	esculin	+	hydrolysis
116739	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
23312	16813 ChEBI	galactitol	-	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23312	5291 ChEBI	gelatin	+	hydrolysis
23312	28066 ChEBI	gentiobiose	+	builds acid from
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
23312	24265 ChEBI	gluconate	-	builds acid from
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
23312	17754 ChEBI	glycerol	+/-	builds acid from
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
23312	28087 ChEBI	glycogen	-	builds acid from
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
116739	606565 ChEBI	hippurate	+	hydrolysis
23312	15443 ChEBI	inulin	+/-	builds acid from
68371	15443 ChEBI	inulin	+	builds acid from	from API 50CH acid
23312	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
23312	18403 ChEBI	L-arabitol	-	builds acid from
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
23312	18287 ChEBI	L-fucose	+/-	builds acid from
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
23312	62345 ChEBI	L-rhamnose	-	builds acid from
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
23312	17266 ChEBI	L-sorbose	-	builds acid from
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
23312	65328 ChEBI	L-xylose	-	builds acid from
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23312	17716 ChEBI	lactose	+	builds acid from
23312	17306 ChEBI	maltose	+	builds acid from
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23312	6731 ChEBI	melezitose	+	builds acid from
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
23312	28053 ChEBI	melibiose	+/-	builds acid from
23312	320061 ChEBI	methyl alpha-D-glucopyranoside	+/-	builds acid from
23312	43943 ChEBI	methyl alpha-D-mannoside	+/-	builds acid from
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
23312	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
23312	17268 ChEBI	myo-inositol	-	builds acid from
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
23312	506227 ChEBI	N-acetylglucosamine	+	builds acid from
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
23312	17632 ChEBI	nitrate	+	reduction
116739	17632 ChEBI	nitrate	+	reduction
116739	16301 ChEBI	nitrite	+	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23312	16634 ChEBI	raffinose	+	builds acid from
23312	15963 ChEBI	ribitol	-	builds acid from
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23312	17814 ChEBI	salicin	+/-	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23312	28017 ChEBI	starch	-	builds acid from
23312	17992 ChEBI	sucrose	+/-	builds acid from
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
23312	32528 ChEBI	turanose	+	builds acid from
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
23312	17151 ChEBI	xylitol	-	builds acid from
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
23312	15688 ChEBI	acetoin
23312	16136 ChEBI	hydrogen sulfide
23312	35581 ChEBI	indole
116739	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
23312	15688 ChEBI	acetoin	-
116739	15688 ChEBI	acetoin	-
116739	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116739	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116739	amylase	+
23312	arginine dihydrolase	-	3.5.3.6
23312	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	+	3.2.1.23	from API zym
116739	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
116739	caseinase	-	3.4.21.50
116739	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116739	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116739	gamma-glutamyltransferase	+	2.3.2.2
116739	gelatinase	+/-
116739	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116739	lipase	-
68382	lipase (C 14)	-		from API zym
23312	lysine decarboxylase	-	4.1.1.18
116739	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
23312	ornithine decarboxylase	-	4.1.1.17
116739	ornithine decarboxylase	-	4.1.1.17
116739	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
23312	tryptophan deaminase	-	4.1.99.1
116739	tryptophan deaminase	-
116739	tween esterase	-
23312	urease	-	3.5.1.5
116739	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	pentose phosphate pathway	100	11 of 11
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	aspartate and asparagine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	acetoin degradation	100	3 of 3
66794	lipoate biosynthesis	100	5 of 5
66794	propanol degradation	100	7 of 7
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	serine metabolism	100	9 of 9
66794	ethanol fermentation	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	propionate fermentation	100	10 of 10
66794	glycine betaine biosynthesis	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	vitamin K metabolism	100	5 of 5
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	heme metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	vitamin B1 metabolism	92.31	12 of 13
66794	alanine metabolism	89.66	26 of 29
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	pyrimidine metabolism	88.89	40 of 45
66794	isoleucine metabolism	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	purine metabolism	86.17	81 of 94
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	proline metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	tryptophan metabolism	78.95	30 of 38
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lysine metabolism	71.43	30 of 42
66794	non-pathway related	71.05	27 of 38
66794	starch degradation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	lipid metabolism	64.52	20 of 31
66794	oxidative phosphorylation	62.64	57 of 91
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	sulfate reduction	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	NAD metabolism	61.11	11 of 18
66794	gallate degradation	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	3-phenylpropionate degradation	60	9 of 15
66794	factor 420 biosynthesis	60	3 of 5
66794	tyrosine metabolism	57.14	8 of 14
66794	degradation of hexoses	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	degradation of sugar acids	52	13 of 25
66794	quinate degradation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	glutathione metabolism	50	7 of 14
66794	degradation of pentoses	50	14 of 28
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	polyamine pathway	47.83	11 of 23
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	myo-inositol biosynthesis	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	ascorbate metabolism	36.36	8 of 22
66794	vitamin B12 metabolism	35.29	12 of 34
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	27.78	5 of 18
66794	chlorophyll metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116739	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	+	-	-	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116739	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	+/-	+	-	-	+	-	+	+	+/-	+/-	+	+	+	+	+/-	+/-	-	-	+	+	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116739	not determinedn.d.	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23312	soil, Drentse A agricultural research area	Anlooer Diepje brook	Netherlands	NLD	Europe	53.0333	6.68333 53.0333/6.68333
5901	soil	near Anloo	Netherlands	NLD	Europe
67770	Soil in the Drentse A agricultural research area along the Anlooër Diepje brook		Netherlands	NLD	Europe
116739	Environment, Soil		Netherlands	NLD	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ542508 (>99% sequence identity) for Neobacillus from Microbeatlas

Aquatic Samples	634
Soil Samples	3750
Animal Samples	1294
Plant Samples	189
Total Samples	5867

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5901	1	Risk group (German classification) According to TRBA 466
116739	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	BABA1.0 assembly for Neobacillus bataviensis LMG 21833	contig	GCA_000307875	1117379.3	2537561923	1117379	35.48

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacillus bataviensis partial 16S rRNA gene, isolate OS-225	AM237399	1399	220685
20218	Bacillus bataviensis gene for 16S rRNA, partial sequence, strain: NBRC 102449	AB681791	1475	220685
23312	Bacillus bataviensis partial 16S rRNA gene, strain LMG 21833	AJ542508	1502	1117379

GC content

@ref	GC-content (mol%)	Method
67770	40.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neobacillus bataviensis LMG 21833
NCBI: GCA_000307875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.20	no
125439	gram_stain	BacteriaNetⓘ	variable	84.20	no
125439	motility	BacteriaNetⓘ	yes	80.80	no
125439	spore_formation	BacteriaNetⓘ	yes	88.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus bataviensis LMG 21833
PATRIC: 1117379.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.76	no
125438	anaerobic	anaerobicⓘ	no	92.04	no
125438	spore-forming	spore-formingⓘ	yes	90.10	no
125438	aerobic	aerobicⓘ	yes	57.29	no
125438	thermophilic	thermophileⓘ	no	87.91	no
125438	flagellated	motile2+ⓘ	yes	60.63	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics Reveals Evidence of the Genome Reduction and Metabolic Potentials of Aliineobacillus hadale Isolated from Challenger Deep Sediment of the Mariana Trench.	Yang S, Liu J, Liu Y, Wu W, Wang J, Wei Y.	Microorganisms	10.3390/microorganisms13010132	2025
	Safety and efficacy of a feed additive consisting of endo-1,4-beta-xylanase EC 3.2.1.8 produced by Bacillus subtilisLMG S-15136 (Belfeed B MP/ML) for gestating sows (Puratos NV).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Villa RE, Azimonti G, Bonos E, Christensen H, Durjava M, Dusemund B, Gehring R, Glandorf B, Kouba M, Lopez-Alonso M, Marcon F, Nebbia C, Pechova A, Prieto-Maradona M, Rohe I, Theodoridou K, Bampidis V, Martelli G, Mayo B, Anguita M, Cionci NB, Innocenti ML, Pizzo F, Ortuno J.	EFSA J	10.2903/j.efsa.2025.9552	2025
	Unraveling the plasticity of translation initiation in prokaryotes: Beyond the invariant Shine-Dalgarno sequence.	Estrada K, Garciarrubio A, Merino E.	PLoS One	10.1371/journal.pone.0289914	2024
	Safety and efficacy of a feed additive consisting of endo-1,4-beta-xylanase produced by Bacillus subtilisLMG S-15136 (Belfeed B MP/ML) for sows in order to have benefits in piglets and for all porcine species (Beldem, a division of Puratos NV).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Durjava MF, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Ramos F, Sanz Y, Villa RE, Woutersen R, Dierick N, Martelli G, Galobart J, Anguita M, Revez J.	EFSA J	10.2903/j.efsa.2021.6456	2021
Metabolism	Response surface method for polyhydroxybutyrate (PHB) bioplastic accumulation in Bacillus drentensis BP17 using pineapple peel.	Penkhrue W, Jendrossek D, Khanongnuch C, Pathom-Aree W, Aizawa T, Behrens RL, Lumyong S.	PLoS One	10.1371/journal.pone.0230443	2020
Enzymology	Recurrent Microvirgula aerodenitrificans bacteremia.	Murphy ME, Goodson A, Malnick H, Shah J, Neelamkavil R, Devi R.	J Clin Microbiol	10.1128/jcm.00392-12	2012
	The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strain Stenotrophomonas sp. Pemsol isolated from Mexico.	Elufisan TO, Rodriguez-Luna IC, Oyedara OO, Sanchez-Varela A, Hernandez-Mendoza A, Dantan Gonzalez E, Paz-Gonzalez AD, Muhammad K, Rivera G, Villalobos-Lopez MA, Guo X.	PeerJ	10.7717/peerj.8102	2020
Pathogenicity	Developing selective media for quantification of multispecies biofilms following antibiotic treatment.	Vandeplassche E, Coenye T, Crabbe A.	PLoS One	10.1371/journal.pone.0187540	2017
	Characterization of Milkisin, a Novel Lipopeptide With Antimicrobial Properties Produced By Pseudomonas sp. UCMA 17988 Isolated From Bovine Raw Milk.	Schlusselhuber M, Godard J, Sebban M, Bernay B, Garon D, Seguin V, Oulyadi H, Desmasures N.	Front Microbiol	10.3389/fmicb.2018.01030	2018
	Susceptibility of bifidobacteria of animal origin to selected antimicrobial agents.	Mayrhofer S, Mair C, Kneifel W, Domig KJ.	Chemother Res Pract	10.1155/2011/989520	2011
Metabolism	Bacteriocinogenic Lactococcus lactis subsp. lactis DF04Mi isolated from goat milk: characterization of the bacteriocin.	Furtado DN, Todorov SD, Landgraf M, Destro MT, Franco BD.	Braz J Microbiol	10.1590/s1517-83822014000400052	2014
	Plant Growth Promoting Rhizobacteria and Silicon Synergistically Enhance Salinity Tolerance of Mung Bean.	Mahmood S, Daur I, Al-Solaimani SG, Ahmad S, Madkour MH, Yasir M, Hirt H, Ali S, Ali Z.	Front Plant Sci	10.3389/fpls.2016.00876	2016
Metabolism	The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent.	Riviere A, Moens F, Selak M, Maes D, Weckx S, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.02853-13	2014
	Bacillus alcaliphilum sp. nov., a bacterium isolated from a soda lake.	Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR.	Arch Microbiol	10.1007/s00203-017-1403-0	2017
Phylogeny	Bacillus thermocopriae sp. nov., isolated from a compost.	Han L, Yang G, Zhou X, Yang D, Hu P, Lu Q, Zhou S.	Int J Syst Evol Microbiol	10.1099/ijs.0.046953-0	2013
Phylogeny	Bacillus abyssalis sp. nov., isolated from a sediment of the South China Sea.	You ZQ, Li J, Qin S, Tian XP, Wang FZ, Zhang S, Li WJ.	Antonie Van Leeuwenhoek	10.1007/s10482-013-9875-7	2013
Phylogeny	Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus.	Hameed A, McDonagh F, Sengupta P, Miliotis G, Sivabalan SKM, Szydlowski L, Simpson A, Singh NK, Rekha PD, Raman K, Venkateswaran K.	Microbiol Spectr	10.1128/spectrum.01376-24	2025
Phylogeny	Bacillus eiseniae sp. nov., a swarming, moderately halotolerant bacterium isolated from the intestinal tract of an earthworm (Eisenia fetida L.).	Hong SW, Park JM, Kim SJ, Chung KS.	Int J Syst Evol Microbiol	10.1099/ijs.0.034892-0	2012
Phylogeny	Bacillus salipaludis sp. nov., isolated from saline-alkaline soil.	Xue L, Tang L, Zhao J, Fang Z, Liu H, Qiao J, Zhang G	Arch Microbiol	10.1007/s00203-021-02239-0	2021
Phylogeny	Bacillus alkalitolerans sp. nov., isolated from marine sediment near a hydrothermal vent.	Liu Y, Yu M, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002648	2018
Phylogeny	Bacillus ectoiniformans sp. nov., a halotolerant bacterium isolated from deep-sea sediments.	Zhu D, Zhang P, Niu L, Xie C, Li P, Sun J, Hang F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000763	2015
Phylogeny	Bacillus ginsengisoli sp. nov., isolated from soil of a ginseng field.	Nguyen NL, Kim YJ, Hoang VA, Min JW, Liang ZQ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.031740-0	2012
Phylogeny	Bacillus herbersteinensis sp. nov.	Wieser M, Worliczek H, Kampfer P, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63660-0	2005
Phylogeny	Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands.	Heyrman J, Vanparys B, Logan NA, Balcaen A, Rodriguez-Diaz M, Felske A, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.02723-0	2004

References

#5901	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15601
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23312	Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos: Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. IJSEM 54: 47 - 57 2004 ( DOI 10.1099/ijs.0.02723-0 , PubMed 14742458 )
#38241	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116739	Collection of Institut Pasteur ; Curators of the CIP; CIP 108807
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neobacillus bataviensis (DSM 15601, CIP 108807, LMG 21833)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000307875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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