Name: Acidithiobacillus thiooxidans DSM 504
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 121

Type strain:

Species: Acidithiobacillus thiooxidans

Culture col. no.: DSM 504, ATCC 8085, IFO 12544, NBRC 12544, NCIMB 9112, JCM 3866, IAM 12133

Strain history: Y. Katayama THI141 <-- IAM 12133.

NCBI tax ID(s): 930 (species)

SI-ID 34918

ATCC 8085, IFO 13701, NCIB 9112, CCUG 2083, DSM 504, IFO 12544, JCM 3866, IAM 12133, NCIMB 9112, KCTC 2505, NBRC13701, CCT 1721, NBRC 12544

Other strains from Acidithiobacillus thiooxidans

A. thiooxidans 3/TA, DSM 14887, ATCC 19377, JCM ... (type strain)
A. thiooxidans GP5, DSM 622
A. thiooxidans B-S2, DSM 9463
A. thiooxidans Tth04, DSM 11478
A. thiooxidans CLST, DSM 103717
A. thiooxidans CIP 104766, ATCC 19703, NCIMB 8345
A. thiooxidans JCM 3868, ATCC 15494
A. thiooxidans JCM 7813
A. thiooxidans JCM 7814

Section

Acidithiobacillus thiooxidans DSM 504 is a mesophilic bacterium of the family Acidithiobacillaceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Acidithiobacillia*
	Order	*Acidithiobacillales*
	Family	*Acidithiobacillaceae*
	Genus	*Acidithiobacillus*
	Species	**Acidithiobacillus thiooxidans**
	Full Scientific Name (LPSN)	Acidithiobacillus thiooxidans (Waksman and Joffe 1922) Kelly and Wood 2000

	Synonym	Acidithiobacillus concretivorus
	Synonym	Thiobacillus concretivorus
	Synonym	Thiobacillus thiooxidans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #242]

Culture medium

ACIDITHIOBACILLUS MEDIUM (DSMZ Medium 35)

[Ref.: #242]

Culture medium growth

[Ref.: #242]

Culture medium link

Medium recipe at MediaDive

[Ref.: #242]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #242]			growth	26 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #242]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #242]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #242]	Acidithiobacillus thiooxidans strain ATCC 8085 16S ribosomal RNA gene, partial sequence	KX894721	1536	ENA	930 tax ID
[Ref.: #20218]	T.thiooxidans 16S-23S rDNA spacer region	X98209	545	ENA	930 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidithiobacillus thiooxidans ATCC 8085	GCA_018854645	contig	GenBank	930 tax ID	*
[Ref.: #66792]	Acidithiobacillus thiooxidans strain ATCC 8085	930.107	wgs	PATRIC	930 tax ID	*

[Ref.: #242]	GC-content	53.0 mol%
[Ref.: #67770]	GC-content	53 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidithiobacillus thiooxidans strain ATCC 8085 PATRIC: 930.107
[Ref.: #69480]	motile	yes	87.643	no
[Ref.: #69480]	flagellated	no	83.818	no
[Ref.: #69480]	gram-positive	no	98.47	no
[Ref.: #69480]	anaerobic	no	96.65	no
[Ref.: #69480]	halophile	no	82.956	no
[Ref.: #69480]	spore-forming	no	94.92	no
[Ref.: #69480]	thermophile	no	93.942	no
[Ref.: #69480]	glucose-util	yes	72.299	no
[Ref.: #69480]	aerobic	no	57.455	no
[Ref.: #69480]	glucose-ferment	no	83.99	no

Availability in culture collections External links

[Ref.: #242]

Culture collection no.

DSM 504, ATCC 8085, IFO 12544, NBRC 12544, NCIMB 9112, JCM 3866, IAM 12133

[Ref.: #69804]

SI-ID 34918

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp.	Rohwerder T, Sand W	Microbiology (Reading)	10.1099/mic.0.26212-0	2003	*
Enzymology	Genomic organization analysis of acidophilic chemolithotrophic bacteria using pulsed field gel electrophoretic techniques.	Amils R, Irazabal N, Moreira D, Abad JP, Marin I	Biochimie	10.1016/s0300-9084(00)88888-4	1998	*
	Direct 5S rRNA Assay for Monitoring Mixed-Culture Bioprocesses.	Stoner DL, Browning CK, Bulmer DK, Ward TE, Macdonell MT	Appl Environ Microbiol	10.1128/aem.62.6.1969-1976.1996	1996	*
	Ferrous Iron and Sulfur Oxidation and Ferric Iron Reduction Activities of Thiobacillus ferrooxidans Are Affected by Growth on Ferrous Iron, Sulfur, or a Sulfide Ore.	Suzuki I, Takeuchi TL, Yuthasastrakosol TD, Oh JK	Appl Environ Microbiol	10.1128/aem.56.6.1620-1626.1990	1990	*
	Factors affecting oxidation of thiosalts by thiobacilli.	Silver M, Dinardo O	Appl Environ Microbiol	10.1128/aem.41.6.1301-1309.1981	1981	*

References

#242	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 504

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69804

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID34918.1 )

* These data were automatically processed and therefore are not curated

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Acidithiobacillus thiooxidans strain ATCC 8085

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