Sporosarcina newyorkensis (DSM 23966, CCUG 60203, LMG 26025)

Name: Sporosarcina newyorkensis (DSM 23966, CCUG 60203, LMG 26025)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12007

Type strain

Strain Designation R-31323

Culture col. no. DSM 23966 CCUG 60203 LMG 26025 R-31323

NCBI tax ID(s) 759851

Special Collections DSMZ CCUG

History <- A. Coorevits, Ghent Univ., Belgium; R-31323 <- V. De Jonghe, Institute of Agricultural and Fisheries Research (ILVO), Belgium

Links

Sporosarcina newyorkensis R-31323 is an aerobe, mesophilic prokaryote that was isolated from raw milk.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371023

LMG 26025,DSM 23966,CCUG 60203

@ref 20215

Last LPSN update 2026-02-09 11:20:43

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Sporosarcina

Species Sporosarcina newyorkensis

Full scientific name Sporosarcina newyorkensis Wolfgang et al. 2012

BacDive ID	Other strains from **Sporosarcina newyorkensis** (5)	Type strain
12006	S. newyorkensis 6062, DSM 23544, CCUG 59649, LMG 26022 (type strain)
12002	S. newyorkensis 2681, DSM 23540, CCUG 59651, LMG 26024
12003	S. newyorkensis 1655, DSM 23541, CCUG 59648, LMG 26023
12004	S. newyorkensis 4331, DSM 23542, CCUG 59647, LMG 26020
12005	S. newyorkensis 5868, DSM 23543, CCUG 59650, LMG 26021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17457	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17457	positive	growth	30	mesophilic
62235	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62235	aerobe
125439	obligate aerobe	91.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17457	raw milk		region of Flanders	Belgium	BEL	Europe
62235	Raw milk	2005	Flanders	Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM910326 (>99% sequence identity) for Sporosarcina newyorkensis subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	150
Animal Samples	410
Plant Samples	15
Total Samples	647

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17457	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2596583703 annotated assembly for Sporosarcina newyorkensis DSM 23966	scaffold	GCA_900167515	759851.4	2596583703	759851	74.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17457	Sporosarcina newyorkensis partial 16S rRNA gene, strain R-31323	AM910326	1514		759851

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporosarcina newyorkensis DSM 23966
NCBI: GCA_900167515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.40	no
125439	motility	BacteriaNetⓘ	yes	75.70	no
125439	gram_stain	BacteriaNetⓘ	variable	80.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporosarcina newyorkensis DSM 23966
NCBI: GCA_900167515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.03	no
125438	anaerobic	anaerobicⓘ	no	95.69	yes
125438	aerobic	aerobicⓘ	yes	77.08	no
125438	spore-forming	spore-formingⓘ	yes	85.21	no
125438	thermophilic	thermophileⓘ	no	90.21	yes
125438	flagellated	motile2+ⓘ	yes	82.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phenotypic Characterization and Draft Genome Sequence Analyses of Two Novel Endospore-Forming Sporosarcina spp. Isolated from Canada Goose (Branta canadensis) Feces.	Keshri J, Smith KM, Svendsen MK, Keillor HR, Moss ML, Jordan HJ, Larkin AM, Garrish JK, Line JE, Ball PN, Oakley BB, Seal BS.	Microorganisms	10.3390/microorganisms12010070	2023
Phylogeny	Probing the microbial diversity and probiotic candidates from Pakistani foods: isolation, characterization, and functional profiling.	Mumtaz A, Ali A, Batool R, Mughal AF, Ahmad N, Batool Z, Abbas S, Khalid N, Ahmed I.	3 Biotech	10.1007/s13205-023-03903-6	2024

References

#17457	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23966
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62235	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60203
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporosarcina newyorkensis (DSM 23966, CCUG 60203, LMG 26025)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900167515

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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