Name: Sporosarcina newyorkensis 6062
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12006

Type strain:

Species: Sporosarcina newyorkensis

Strain Designation: 6062

Culture col. no.: DSM 23544, CCUG 59649, LMG 26022

Strain history: <- W. J. Wolfgang, Wadsworth Center, NYS Dept. Health, USA; strain 6062 <- Sisters of Charity Hospital, Catholic Health System

NCBI tax ID(s): 759851 (species)

SI-ID 374122

LMG 26022, CCUG 59649, DSM 23544

Special Collections

Other strains from Sporosarcina newyorkensis

Section

Sporosarcina newyorkensis 6062 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from clinical specimen, blood of a 57-year-old man.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Sporosarcina*
	Species	**Sporosarcina newyorkensis**
	Full Scientific Name (LPSN)	Sporosarcina newyorkensis Wolfgang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30158]	Gram stain	positive

[Ref.: #30158]	Cell length	1.5 µm

[Ref.: #30158]	Cell width	0.6 µm

[Ref.: #30158]	Cell shape	rod-shaped

[Ref.: #30158]	Motility	yes

[Ref.: #30158]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17272]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17272]

Culture medium growth

[Ref.: #17272]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17272]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17272]	growth	37 °C
[Ref.: #30158]	growth	10-42 °C
[Ref.: #30158]	optimum	22-28 °C
[Ref.: #62055]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #30158]			optimum	7.2-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30158]	Oxygen tolerance	facultative anaerobe
[Ref.: #62055]	Oxygen tolerance	aerobe

[Ref.: #30158]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30158]		NaCl		growth	2-13	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30158]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30158]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30158]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30158]	catalase	+	1.11.1.6
[Ref.: #30158]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30158]	gelatinase	+
[Ref.: #30158]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17272]	Sample type/isolated from	clinical specimen, blood of a 57-year-old man
[Ref.: #17272]	Geographic location (country and/or sea, region)	New York State, Erie County
[Ref.: #17272]	Country	USA
[Ref.: #17272]	Country ISO 3 Code	USA
[Ref.: #17272]	Continent	North America

[Ref.: #62055]	Sample type/isolated from	Human blood
[Ref.: #62055]	Sampling date	2008-10-17
[Ref.: #62055]	Geographic location (country and/or sea, region)	Buffalo,New York State
[Ref.: #62055]	Country	USA
[Ref.: #62055]	Country ISO 3 Code	USA
[Ref.: #62055]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU994085 (>99% sequence identity) for Sporosarcina newyorkensis subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	150
Animal Samples	410
Plant Samples	15
Total Samples	647

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17272]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17272]	Sporosarcina newyorkensis strain 6062 16S ribosomal RNA gene, partial sequence	GU994085	1474	GenBank ENA	759851 tax ID

[Ref.: #17272]	GC-content	42.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30158]	GC-content	42.4 mol%

Availability in culture collections External links

[Ref.: #17272]

Culture collection no.

DSM 23544, CCUG 59649, LMG 26022

[Ref.: #81225]

SI-ID 374122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporosarcina newyorkensis sp. nov. from clinical specimens and raw cow's milk.	Wolfgang WJ, Coorevits A, Cole JA, De Vos P, Dickinson MC, Hannett GE, Jose R, Nazarian EJ, Schumann P, Van Landschoot A, Wirth SE, Musser KA	Int J Syst Evol Microbiol	10.1099/ijs.0.030080-0	2011	*

References

#17272

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23544

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30158

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26509 (see below)

#62055 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59649

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81225

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID374122.1 )

#26509

IJSEM 322 2012 ( DOI 10.1099/ijs.0.030080-0 , PubMed 21421928 )

* These data were automatically processed and therefore are not curated

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