Name: Sporosarcina newyorkensis 5868
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12005

Type strain:

Species: Sporosarcina newyorkensis

Strain Designation: 5868

Culture col. no.: DSM 23543, CCUG 59650, LMG 26021

Strain history: <- W. J. Wolfgang, Wadsworth Center, NYS Dept. Health, USA; strain 5868 <- Erie County Medical Center

NCBI tax ID(s): 759851 (species)

SI-ID 393773

LMG 26021, DSM 23543

Special Collections

DSMZ
CCUG

Other strains from Sporosarcina newyorkensis

Section

Sporosarcina newyorkensis 5868 is an aerobe bacterium that was isolated from clinical specimen, eye of a 30-year-old woman.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Sporosarcina*
	Species	**Sporosarcina newyorkensis**
	Full Scientific Name (LPSN)	Sporosarcina newyorkensis Wolfgang et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17271]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17271]

Culture medium growth

[Ref.: #17271]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17271]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17271]			growth	37 °C
[Ref.: #62056]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62056]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17271]	Sample type/isolated from	clinical specimen, eye of a 30-year-old woman
[Ref.: #17271]	Geographic location (country and/or sea, region)	New York State, Erie County
[Ref.: #17271]	Country	USA
[Ref.: #17271]	Country ISO 3 Code	USA
[Ref.: #17271]	Continent	North America

[Ref.: #62056]	Sample type/isolated from	Human clinical sample
[Ref.: #62056]	Sampling date	2008-10-02
[Ref.: #62056]	Geographic location (country and/or sea, region)	Buffalo,New York State
[Ref.: #62056]	Country	USA
[Ref.: #62056]	Country ISO 3 Code	USA
[Ref.: #62056]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen
#Host Body-Site	#Organ	#Eye
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU994087 (>99% sequence identity) for Sporosarcina newyorkensis subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	150
Animal Samples	410
Plant Samples	15
Total Samples	647

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17271]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17271]	Sporosarcina newyorkensis strain 5868 16S ribosomal RNA gene, partial sequence	GU994087	1474	GenBank ENA	759851 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporosarcina newyorkensis DSM 23543	2596583686	draft	JGI IMG/M	759851 tax ID	*

Availability in culture collections External links

[Ref.: #17271]

Culture collection no.

DSM 23543, CCUG 59650, LMG 26021

[Ref.: #81223]	SI-ID 393773	*
[Ref.: #81224]	SI-ID 409697	*

References

#17271

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23543

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62056 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59650

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81223

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID393773.1 )

#81224

* These data were automatically processed and therefore are not curated

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