Sporosarcina psychrophila (DSM 3, ATCC 23304, CCM 2117)

Name: Sporosarcina psychrophila (DSM 3, ATCC 23304, CCM 2117)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11984

Type strain

Strain Designation W16A

Culture col. no. DSM 3 ATCC 23304 CCM 2117 NRRL NRS-1530 CCUG 28886 14 more

NCBI tax ID(s) 1476

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- J. L. Stokes; W16A JCM <-- NRRL NRS-1530 <-- N. R. Smith NRS-1530 <-- J. L. Stokes W16A. CIP <- 1988, DSM <- J.L. Stokes: strain W16A

Links

Sporosarcina psychrophila W16A is a bacterium that was isolated from Soil and river water.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 51842

LMG 6929,ATCC 23304,CCM 2117,DSM 3,IAM 12468,LMG 17352,LMG 7131,CCUG 28886,NRRL B-3397,CIP 103267,NRRL NRS-1530,JCM 9075,CCRC 11738,IFO 15381,CECT 4073,CFBP 2979,KCTC 3446,NBRC 15381,BCRC 11738,CGMCC 1.2016

@ref 20215

Last LPSN update 2026-05-29 08:27:41

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Sporosarcina

Species Sporosarcina psychrophila

Full scientific name Sporosarcina psychrophila (Nakamura 1984 ex Larkin and Stokes 1967) Yoon et al. 2001

Synonyms (1)

Bacillus psychrophilus

BacDive ID	Other strains from **Sporosarcina psychrophila** (4)	Type strain
11982	S. psychrophila W5, DSM 2273, ATCC 23306, NRRL NRS-1525
11983	S. psychrophila W3, DSM 2274, ATCC 23305, NRRL NRS-1524
11985	S. psychrophila T5A, DSM 6497, NRRL 1515
11986	S. psychrophila W10A, DSM 6498, NRRL 1528

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2011	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40586	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122023	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2011	positive	growth	20
40586	positive	growth	15
67770	positive	growth	25

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	butanoate fermentation	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	biotin biosynthesis	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	propionate fermentation	100	10 of 10
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ceramide biosynthesis	100	1 of 1
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	propanol degradation	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	alanine metabolism	86.21	25 of 29
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	pyrimidine metabolism	82.22	37 of 45
66794	proline metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	factor 420 biosynthesis	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	starch degradation	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	phenylalanine metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	degradation of sugar alcohols	75	12 of 16
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lysine metabolism	71.43	30 of 42
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	glutathione metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	gallate degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of sugar acids	56	14 of 25
66794	cysteine metabolism	55.56	10 of 18
66794	sulfate reduction	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	lipid metabolism	51.61	16 of 31
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	myo-inositol biosynthesis	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	acetate fermentation	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	cholesterol biosynthesis	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	O-antigen biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	creatinine degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	vitamin B6 metabolism	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoil and river water

Taxonmaps

69479

Global distribution of 16S sequence D16277 (>99% sequence identity) for Sporosarcina from Microbeatlas

Aquatic Samples	2194
Soil Samples	10719
Animal Samples	3706
Plant Samples	1805
Total Samples	18424

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2011	1	Risk group (German classification) According to TRBA 466
122023	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	B.psychrophilus 16S ribosomal RNA	X60634	1428	1476
20218	Sporosarcina psychrophila gene for 16S rRNA, partial sequence	AB006933	275	1476
20218	Sporosarcina psychrophila gene for 16S rRNA, partial sequence, strain: IAM 12468	D16277	1485	1476
20218	Sporosarcina psychrophila gene for 16S rRNA, partial sequence, strain: NBRC 15381	AB680853	1477	1476
20218	B. psychrophilus rDNA for 16S rRNA (strain W16A)	X54968	1552	1476
124043	Sporosarcina psychrophila strain CCM 2117 16S ribosomal RNA gene, partial sequence.	MT757992	1388	1476
124043	Sporosarcina psychrophila strain CCM 2117 16S ribosomal RNA gene, partial sequence.	MT760068	1388	1476

GC content

@ref	GC-content (mol%)	Method
2011	44.1	Buoyant density centrifugation (BD)
2011	40.5	Buoyant density centrifugation (BD)
2011	39.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Expression of Novel L-Leucine Dehydrogenase and High-Level Production of L-Tert-Leucine Catalyzed by Engineered Escherichia coli.	Jia YY, Xie YL, Yang LL, Shi HL, Lu YF, Zhang SP, Tang CD, Yao LG, Kan YC.	Front Bioeng Biotechnol	10.3389/fbioe.2021.655522	2021
Phylogeny	Application of denaturing high-performance liquid chromatography in microbial ecology: fermentor sludge, compost, and soil community profiling.	Wagner AO, Malin C, Illmer P.	Appl Environ Microbiol	10.1128/aem.01411-08	2009
	Chemical analysis of cell walls and autolytic digests of Bacillus psychrophilus.	Best GK, Mattingly SJ.	J Bacteriol	10.1128/jb.115.1.221-227.1973	1973
Metabolism	Effect of temperature on the integrity of Bacillus psychrophilus cell walls.	Mattingly SJ, Best GK.	J Bacteriol	10.1128/jb.109.2.645-651.1972	1972
Phylogeny	Isolation, Physiological Characterization, and Antibiotic Susceptibility Testing of Fast-Growing Bacteria from the Sea-Affected Temporary Meltwater Ponds in the Thala Hills Oasis (Enderby Land, East Antarctica).	Akulava V, Miamin U, Akhremchuk K, Valentovich L, Dolgikh A, Shapaval V.	Biology (Basel)	10.3390/biology11081143	2022

References

#2011	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40586	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122023	Collection of Institut Pasteur ; Curators of the CIP; CIP 103267
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporosarcina psychrophila (DSM 3, ATCC 23304, CCM 2117)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Pathway annotation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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