Name: Planococcus columbae PgEx11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11961

Type strain:

Species: Planococcus columbae

Strain Designation: PgEx11

Culture col. no.: DSM 17517, MTCC 7251

Strain history: <- T. Chakrabarti <- K. Suresh; PgEx11

NCBI tax ID(s): 326078 (species)

Section

Planococcus columbae PgEx11 is an aerobe, Gram-positive, motile bacterium that was isolated from pigeon faeces.

coccus-shaped
Gram-positive
motile
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus columbae**
	Full Scientific Name (LPSN)	Planococcus columbae Suresh et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31975]	Gram stain	positive

[Ref.: #31975]	Cell width	0.8-1 µm

[Ref.: #31975]	Cell shape	coccus-shaped

[Ref.: #31975]	Motility	yes

[Ref.: #31975]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31975]			growth	08-42 °C
[Ref.: #31975]			optimum	30 °C

[Ref.: #31975]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31975]			optimum	07-08
[Ref.: #31975]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31975]

Oxygen tolerance

aerobe

[Ref.: #31975]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31975]		NaCl		growth	0-14	%
[Ref.: #31975]		NaCl		optimum	04-05	%

[Ref.: #7036]	Murein short key	A11.33
[Ref.: #7036]	Murein types	A4alpha L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31975]	arabinose ChEBI	+	carbon source
[Ref.: #31975]	cellobiose ChEBI	+	carbon source
[Ref.: #31975]	fructose ChEBI	+	carbon source
[Ref.: #31975]	galactose ChEBI	+	carbon source
[Ref.: #31975]	glucosamine ChEBI	+	carbon source
[Ref.: #31975]	glucose ChEBI	+	carbon source
[Ref.: #31975]	L-arabitol ChEBI	+	carbon source
[Ref.: #31975]	lactose ChEBI	+	carbon source
[Ref.: #31975]	maltose ChEBI	+	carbon source
[Ref.: #31975]	mannitol ChEBI	+	carbon source
[Ref.: #31975]	mannose ChEBI	+	carbon source
[Ref.: #31975]	rhamnose ChEBI	+	carbon source
[Ref.: #31975]	ribose ChEBI	+	carbon source
[Ref.: #31975]	sucrose ChEBI	+	carbon source
[Ref.: #31975]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31975]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7036]	Sample type/isolated from	pigeon faeces
[Ref.: #7036]	Geographic location (country and/or sea, region)	Imtech, Chandigarh
[Ref.: #7036]	Country	India
[Ref.: #7036]	Country ISO 3 Code	IND
[Ref.: #7036]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ966515 (>99% sequence identity) for Planococcus columbae from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7036]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7036]	Planococcus columbae partial 16S rRNA gene, type strain PgEx11T	AJ966515	1481	ENA	326078 tax ID

[Ref.: #7036]

GC-content

50.5 mol%

Availability in culture collections External links

[Ref.: #7036]

Culture collection no.

DSM 17517, MTCC 7251

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planococcus columbae sp. nov., isolated from pigeon faeces.	Suresh K, Mayilraj S, Bhattacharya A, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.64742-0	2007	*

References

#7036

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17517

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31975

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28230 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28230

IJSEM 1266 2007 ( DOI 10.1099/ijs.0.64742-0 , PubMed 17551041 )

* These data were automatically processed and therefore are not curated

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