Planococcus salinarum (DSM 23820, CCUG 57753, KCTC 13584)

Name: Planococcus salinarum (DSM 23820, CCUG 57753, KCTC 13584)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11960

Type strain

Strain Designation ISL-16

Culture col. no. DSM 23820 CCUG 57753 KCTC 13584 ISL-16

NCBI tax ID(s) 622695

Special Collections DSMZ CCUG KCTC Literature strains

History <- CCUG <- J. H. Yoon, KRIBB, Taejon, South Korea <- JH Yoon, KRIBB

Links

Planococcus salinarum ISL-16 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from sediment from marine solar saltern.

Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400238

KCTC 13584,DSM 23820,CCUG 57753

@ref 20215

Last LPSN update 2026-02-09 11:20:42

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Planococcus

Species Planococcus salinarum

Full scientific name Planococcus salinarum Yoon et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29437	positive	2.9 µm	0.6 µm	rod-shaped
67771				rod-shaped
67771				coccus-shaped
67771	positive

Colony morphology

61441

Incubation period3 days

Pigmentation

29437

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17388	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17388	positive	growth	28	mesophilic
29437	positive	growth	04-38
61441	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29437	positive	optimum	7.25
29437	positive	growth	6-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29437	aerobe
61441	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29437	NaCl	positive	growth	0-13 %
29437	NaCl	positive	optimum	2 %

Observation

67771

Observationquinones: MK-8, MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29437	28757 ChEBI	fructose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17388	sediment from marine solar saltern		Yellow Sea	Republic of Korea	KOR	Asia
61441	Sediment from marine solar saltern	2007	Yellow Sea	Republic of Korea	KOR	Asia
67771	From marine solar saltern of the Yellow Sea		Byunsan	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ765415 (>99% sequence identity) for Planococcus salinarum from Microbeatlas

Aquatic Samples	84
Soil Samples	72
Animal Samples	148
Plant Samples	27
Total Samples	331

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17388	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM700462v1 assembly for Planococcus salinarum KCTC 13584	scaffold	GCA_007004625	622695.5	8117809176	622695	58.02
66792	ASM342886v1 assembly for Planococcus salinarum ISL-16	contig	GCA_003428865	622695.4	2840865273	622695	57.47
66792	ASM185608v1 assembly for Planococcus salinarum DSM 23820	contig	GCA_001856085	622695.3	2837105295	622695

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17388	Planococcus salinarum strain ISL-16 16S ribosomal RNA gene, partial sequence	FJ765415	1506		622695

GC content

@ref	GC-content (mol%)	Method
17388	48.3	high performance liquid chromatography (HPLC)
29437	48.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planococcus salinarum KCTC 13584
NCBI: GCA_007004625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.70	no
125439	motility	BacteriaNetⓘ	yes	77.50	no
125439	gram_stain	BacteriaNetⓘ	variable	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planococcus salinarum KCTC 13584
NCBI: GCA_007004625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	79.79	yes
125438	anaerobic	anaerobicⓘ	no	95.71	yes
125438	aerobic	aerobicⓘ	yes	83.86	no
125438	spore-forming	spore-formingⓘ	yes	60.33	no
125438	thermophilic	thermophileⓘ	no	93.01	yes
125438	flagellated	motile2+ⓘ	yes	54.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation and diversity of sediment bacteria in the hypersaline aiding lake, China.	Guan TW, Lin YJ, Ou MY, Chen KB.	PLoS One	10.1371/journal.pone.0236006	2020
Phylogeny	Planococcus salinus sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.	Gan L, Zhang H, Tian J, Li X, Long X, Zhang Y, Dai Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002548	2018
Phylogeny	Planococcus salinarum sp. nov., isolated from a marine solar saltern, and emended description of the genus Planococcus.	Yoon JH, Kang SJ, Lee SY, Oh KH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.013136-0	2009

References

#17388	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23820
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25843	IJSEM 754 2010 ( DOI 10.1099/ijs.0.013136-0 , PubMed 19656937 )
#29437	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25843
#61441	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57753
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Planococcus salinarum (DSM 23820, CCUG 57753, KCTC 13584)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007004625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media