Name: Planococcus kocurii DSM 20747
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11956

Type strain:

Species: Planococcus kocurii

Culture col. no.: DSM 20747, ATCC 43650, CCM 1849, JCM 2569, NCMB 629, CECT 4620, CGMCC 1.2715, IAM 12847, IFO 15850, LMG 17320, NBRC 15850, NCIMB 629

Strain history: M. V. Hao HK 701 <-- AJ 3345 <-- CCM 1849 <-- NCMB 629 <-- D. L. Georgala 732.

NCBI tax ID(s): 1374 (species)

SI-ID 9212

LMG 17320, ATCC 43650, CCM 1849, IAM 12847, IFO 15850, JCM 2569, NCIMB 629, NCMB 629, CECT 4620, NBRC 15850, CGMCC 1.2715, DSM 20747

Other strains from Planococcus kocurii

P. kocurii JCM 2570, CCM 2069, IAM 13045, ...
P. kocurii JCM 2571, CCM 2104, IAM 13046, ...
P. kocurii JCM 2572, CCM 2416, IAM 13047
P. kocurii JCM 2573, CCM 2414, IAM 13048

Section

Planococcus kocurii DSM 20747 is a mesophilic bacterium that was isolated from skin of cod.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus kocurii**
	Full Scientific Name (LPSN)	Planococcus kocurii Hao and Komagata 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9056]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #9056]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9056]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #9056]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9056]	Murein short key	A11.33
[Ref.: #9056]	Murein types	A4alpha L-Lys-D-Glu

[Ref.: #67770]

Observation

quinones: MK-7, MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9056]	Sample type/isolated from	skin of cod
[Ref.: #9056]	Geographic location (country and/or sea, region)	North Sea

[Ref.: #67770]	Sample type/isolated from	Skin of North Sea cod
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9056]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Planococcus kocurii strain DSM 20747 16S-23S rRNA intergenic spacer region	AF145718	196	ENA	1374 tax ID	*
[Ref.: #20218]	Planococcus kocurii gene for 16S rRNA, partial sequence, strain: NBRC 15850	AB680986	1475	ENA	1374 tax ID	*
[Ref.: #20218]	P.kocurii 16S rRNA	X62173	1430	ENA	1374 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planococcus kocurii ATCC 43650	GCA_001465835	complete	GenBank	1374 tax ID	*
[Ref.: #66792]	Planococcus kocurii strain ATCC 43650	1374.9	plasmid	PATRIC	1374 tax ID	*
[Ref.: #66792]	Planococcus kocurii strain ATCC 43650	1374.4	complete	PATRIC	1374 tax ID	*
[Ref.: #66792]	Planococcus kocurii JCM 2569	2775507277	complete	JGI IMG/M	1374 tax ID	*

[Ref.: #9056]	GC-content	40.0 mol%
[Ref.: #67770]	GC-content	40 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planococcus kocurii ATCC 43650 NCBI: GCA_001465835.1
[Ref.: #69480]	flagellated	no	58.804	no
[Ref.: #69480]	gram-positive	yes	89.87	no
[Ref.: #69480]	anaerobic	no	99.365	no
[Ref.: #69480]	aerobic	yes	97.141	no
[Ref.: #69480]	halophile	yes	75.76	no
[Ref.: #69480]	spore-forming	no	55.101	no
[Ref.: #69480]	glucose-util	yes	87.624	no
[Ref.: #69480]	motile	yes	76.922	no
[Ref.: #69480]	thermophile	no	99.829	yes
[Ref.: #69480]	glucose-ferment	no	84.428	no
[Ref.: #69480]	flagellated	no	58.804	no
[Ref.: #69480]	gram-positive	yes	89.87	no
[Ref.: #69480]	anaerobic	no	99.365	no
[Ref.: #69480]	aerobic	yes	97.141	no
[Ref.: #69480]	halophile	yes	75.76	no
[Ref.: #69480]	spore-forming	no	55.101	no
[Ref.: #69480]	glucose-util	yes	87.624	no
[Ref.: #69480]	motile	yes	76.922	no
[Ref.: #69480]	thermophile	no	99.829	yes
[Ref.: #69480]	glucose-ferment	no	84.428	no

Availability in culture collections External links

[Ref.: #9056]

Culture collection no.

DSM 20747, ATCC 43650, CCM 1849, JCM 2569, NCMB 629, CECT 4620, CGMCC 1.2715, IAM 12847, IFO 15850, LMG 17320, NBRC 15850, NCIMB 629

[Ref.: #81169]

SI-ID 9212

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planococcus versutus sp. nov., isolated from soil.	See-Too WS, Ee R, Madhaiyan M, Kwon SW, Tan JY, Lim YL, Convey P, Pearce DA, Yin WF, Chan KG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001721	2017	*
Genetics	De novo assembly of complete genome sequence of Planococcus kocurii ATCC 43650(T), a potential plant growth promoting bacterium.	See-Too WS, Tan JY, Ee R, Lim YL, Convey P, Pearce DA, Yin WF, Chan KG	Mar Genomics	10.1016/j.margen.2016.04.007	2016	*
Phylogeny	Planococcus faecalis sp. nov., a carotenoid-producing species isolated from stools of Antarctic penguins.	Kim JH, Kang HJ, Yu BJ, Kim SC, Lee PC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000423	2015	*
Phylogeny	Planococcus donghaensis sp. nov., a starch-degrading bacterium isolated from the East Sea, South Korea.	Choi JH, Im WT, Liu QM, Yoo JS, Shin JH, Rhee SK, Roh DH	Int J Syst Evol Microbiol	10.1099/ijs.0.65036-0	2007	*
Phylogeny	Planococcus maritimus sp. nov., isolated from sea water of a tidal flat in Korea.	Yoon JH, Weiss N, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02557-0	2003	*

References

#9056

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20747

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81169

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9212.1 )

* These data were automatically processed and therefore are not curated

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Planococcus kocurii ATCC 43650

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