Name: Sporosarcina limicola DSM 13886
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11949

Type strain:

Species: Sporosarcina limicola

Variant: Isotype of BacDive ID 131072

Culture col. no.: DSM 13886, ATCC 43646, NCIMB 11923, ISS 101

Strain history: <- NCIMB <- M. F. J. Maiden; ISS101

NCBI tax ID(s): 34101 (species)

SI-ID 41963

ATCC 43646, NCIB 11923, NCIMB 11923, DSM 13886, DSM 12288

Other strains from Sporosarcina limicola

S. limicola 1SS101, DSM 12288, NCIMB 11923 (type strain)

Section

Sporosarcina limicola DSM 13886 is a spore-forming, psychrophilic, Gram-positive bacterium that was isolated from lake sediment.

Gram-positive
spore-forming
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Sporosarcina*
	Species	**Sporosarcina limicola**
	Full Scientific Name (LPSN)	Sporosarcina limicola (Maiden and Jones 1985) Gupta and Patel 2020

Synonym

Filibacter limicola

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.879

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5190]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #5190]

Culture medium growth

[Ref.: #5190]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5190]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5190]			growth	20 °C

[Ref.: #5190]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.447

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5190]	Sample type/isolated from	lake sediment
[Ref.: #5190]	Geographic location (country and/or sea, region)	English Lake District, Blelham Tarn
[Ref.: #5190]	Country	United Kingdom
[Ref.: #5190]	Country ISO 3 Code	GBR
[Ref.: #5190]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5190]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5190]	Filibacter limicola 16S rRNA gene, strain DSM 13886T	AJ292316	1517	ENA	34101 tax ID
[Ref.: #20218]	Filibacter limicola (NCIMB 11925) 16S rRNA	X70317	1343	ENA	34101 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporosarcina limicola DSM 13886	GCA_014873855	scaffold	GenBank	34101 tax ID	*
[Ref.: #66792]	Filibacter limicola strain DSM 13886	34101.3	wgs	PATRIC	34101 tax ID	*
[Ref.: #66792]	Filibacter limicola DSM 13886	2875783027	draft	JGI IMG/M	34101 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Filibacter limicola DSM 13886 NCBI: GCA_014873855.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Filibacter limicola DSM 13886 NCBI: GCA_014873855.1
[Ref.: #69480]	flagellated	yes	73.07	no
[Ref.: #69480]	gram-positive	yes	86.179	no
[Ref.: #69480]	anaerobic	no	98.075	no
[Ref.: #69480]	aerobic	yes	88.289	no
[Ref.: #69480]	halophile	no	71.186	no
[Ref.: #69480]	spore-forming	yes	94.124	no
[Ref.: #69480]	glucose-util	yes	79.661	no
[Ref.: #69480]	thermophile	no	99.596	yes
[Ref.: #69480]	motile	yes	86.888	no
[Ref.: #69480]	glucose-ferment	no	91.754	no

Availability in culture collections External links

[Ref.: #5190]

Culture collection no.

DSM 13886, ATCC 43646, NCIMB 11923, ISS 101

[Ref.: #81162]

SI-ID 41963

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.	Kampfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.003334	2019	*
Phylogeny	Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov.	Clavel T, Charrier C, Braune A, Wenning M, Blaut M, Haller D	Int J Syst Evol Microbiol	10.1099/ijs.0.003087-0	2009	*

References

#5190

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13886

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81162

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41963.1 )

* These data were automatically processed and therefore are not curated

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Filibacter limicola DSM 13886

Filibacter limicola DSM 13886

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