Planctopirus limnophila Müller 290 | Type strain | DSM 3776, ATCC 43296, IFAM 1008

Strain identifier

BacDive ID: 11940

Type strain:

Species: Planctopirus limnophila

Strain Designation: Müller 290

Culture col. no.: DSM 3776, ATCC 43296, IFAM 1008

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #1470]	Domain	Bacteria
[Ref.: #1470]	Phylum	Planctomycetes
[Ref.: #1470]	Class	Planctomycetacia
[Ref.: #1470]	Order	Planctomycetales
[Ref.: #1470]	Family	Planctomycetaceae
[Ref.: #1470]	Genus	Planctopirus
[Ref.: #1470]	Species	Planctopirus limnophila
[Ref.: #1470]	Full Scientific Name	Planctomyces limnophilus Hirsch and Müller 1986
[Ref.: #1470]	Strain Designation	Müller 290
[Ref.: #1470]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Planctomycetes
[Ref.: #20215]	Class	Planctomycetacia		Int. J. Syst. Bacteriol. 1:119
[Ref.: #20215]	Family	Planctomycetaceae		Int. J. Syst. Bacteriol. 37:179
[Ref.: #20215]	Genus	Planctopirus	gen. nov. (VL)	Int. J. Syst. Evol. Microbiol. 65:741
[Ref.: #20215]	Species	Planctopirus limnophila	comb. nov. (VL)	Int. J. Syst. Evol. Microbiol. 65:741
[Ref.: #20215]	Full Scientific Name	Planctopirus limnophila corrig. (Hirsch and Müller 1986) Scheuner et al. 2015

[Ref.: #20215]	Synonym	Planctomyces limnophilus
[Ref.: #20215]	Synonym	Planctopirus limnophilus

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1470]

Culture medium

PYGV AGAR (DSMZ Medium 621), 30°C

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Culture medium growth

[Ref.: #1470]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1470]			growth	30 ̊C

[Ref.: #1470]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #1470]

Sample type/isolated from

surface water

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Geographic location (country and/or sea, region)

Holstein

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Country

Germany

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Continent

Europe

Isolation sources categories

#Environmental

#Aquatic

#Surface water

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1470]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C168, whole genome shotgun sequence	ABUK01000001	WGS	5423025	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C237, whole genome shotgun sequence	ABUK01000002	WGS	3426	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C30, whole genome shotgun sequence	ABUK01000003	WGS	2755	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C141, whole genome shotgun sequence	ABUK01000004	WGS	2727	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C225, whole genome shotgun sequence	ABUK01000005	WGS	2711	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C274, whole genome shotgun sequence	ABUK01000006	WGS	2695	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C193, whole genome shotgun sequence	ABUK01000007	WGS	2653	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C38, whole genome shotgun sequence	ABUK01000008	WGS	2547	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C275, whole genome shotgun sequence	ABUK01000009	WGS	2537	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C155, whole genome shotgun sequence	ABUK01000010	WGS	2415	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C271, whole genome shotgun sequence	ABUK01000011	WGS	2359	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C37, whole genome shotgun sequence	ABUK01000012	WGS	2278	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C189, whole genome shotgun sequence	ABUK01000013	WGS	2110	521674	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Planctomyces limnophilus DSM 3776 PlimDRAFT_4083246_C219, whole genome shotgun sequence	ABUK01000014	WGS	2015	521674	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Planctomyces limnophilus RNA polymerase subunit sigma-54 (rpoN) gene, complete cds	AF061965		2492	521674	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Planctomyces limnophilus 23S ribosomal RNA gene, partial sequence	AF245365		2808	521674	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Planctomyces limnophilus RNase P RNA subunit (rnpB) gene, partial sequence	AY371119		316	521674	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Planctomyces limnophilus DSM 3776 transfer-messenger mRNA Planc_limno_3776, single chain mature transcript	HG787683		361	521674	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	P.limnophilus 16S rDNA	X62911	16S	1528	521674	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Planctomyces limnophilus dnaK gene, partial	Y14789		636	521674	*
[Ref.: #1470]	plasmid pPLIM01, complete sequence, GenBank Genome project data	Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence	CP001745		37010	521674
[Ref.: #1470]	complete genome, GenBank Genome project data	Planctopirus limnophila DSM 3776 chromosome, complete genome	CP001744		5423075	521674

Availability in culture collectionsStrain availability

[Ref.: #1470]

Culture collection no.

DSM 3776, ATCC 43296, IFAM 1008

[Ref.: #1470]

Strain history

<- IFAM <- Müller, 290

[Ref.: #20218]

Associated Passport(s) in StrainInfo

158535, 112429, 112430

References

#1470

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3776

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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