Rubinisphaera brasiliensis (DSM 5305, ATCC 49424, IFAM 1448)

Name: Rubinisphaera brasiliensis (DSM 5305, ATCC 49424, IFAM 1448)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11938

Type strain

Culture col. no. DSM 5305 ATCC 49424 IFAM 1448 JCM 21570 NBRC 103401 1 more

NCBI tax ID(s) 756272 119

Special Collections DSMZ JCM

History DSMZ <- H. Schlesner, IFAM JCM <-- IAM 15109 <-- DSM 5305 <-- H. Schlesner IFAM 1448.

Links

Rubinisphaera brasiliensis DSM 5305 is a bacterium that was isolated from water from salt pit.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42463

ATCC 49424,DSM 5305,NCIMB 13185,JCM 21570,NBRC 103401,IAM 15109

@ref 20215

Last LPSN update 2026-05-29 08:27:40

Domain Bacteria

Phylum Planctomycetota

Class Planctomycetia

Order Planctomycetales

Family Planctomycetaceae

Genus Rubinisphaera

Species Rubinisphaera brasiliensis

Full scientific name Rubinisphaera brasiliensis (Schlesner 1990) Scheuner et al. 2015

Synonyms (1)

Planctomyces brasiliensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.978

Multimedia

@ref:	66793
multimedia content:	EM_DSM_5305_1.jpg
multimedia.multimedia content:	EM_DSM_5305_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1983	M13 VERRUCOMICROBIUM MEDIUM (DSMZ Medium 607)		Medium recipe at MediaDive	Name: M13 VERRUCOMICROBIUM MEDIUM (DSMZ Medium 607) Composition: NaCl 5.86925 g/l MgCl2 x 6 H2O 1.24525 g/l Na2SO4 0.97925 g/l MgSO4 x 7 H2O 0.594 g/l CaCl2 0.2755 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.2 g/l KCl 0.166 g/l CaCl2 x 2 H2O 0.0667 g/l NaHCO3 0.048 g/l H3BO3 0.0065 g/l SrCl2 0.006 g/l KBr 0.0015 g/l ZnSO4 x 7 H2O 0.001095 g/l NaF 0.00075 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Nicotinamide 5e-05 g/l Riboflavin 5e-05 g/l Calcium pantothenate 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Tris-HCl buffer Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1983	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.463

Spore formation

@ref	Spore formation	Confidence
125439		98.908

Compound production

@ref	Compound
1983	catalase
1983	cytochrome oxidase
1983	H₂S

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	methanofuran biosynthesis	80	4 of 5
66794	starch degradation	80	8 of 10
66794	Entner Doudoroff pathway	80	8 of 10
66794	flavin biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	glycolysis	76.47	13 of 17
66794	purine metabolism	75.53	71 of 94
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	leucine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	serine metabolism	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	pyrimidine metabolism	64.44	29 of 45
66794	glutathione metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	degradation of sugar acids	64	16 of 25
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	sulfate reduction	61.54	8 of 13
66794	vitamin B1 metabolism	61.54	8 of 13
66794	gallate degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	arginine metabolism	58.33	14 of 24
66794	lipid metabolism	58.06	18 of 31
66794	tryptophan metabolism	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	ascorbate metabolism	54.55	12 of 22
66794	vitamin B6 metabolism	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	oxidative phosphorylation	52.75	48 of 91
66794	selenocysteine biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	cholesterol biosynthesis	45.45	5 of 11
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	tyrosine metabolism	42.86	6 of 14
66794	methanogenesis from CO2	41.67	5 of 12
66794	myo-inositol biosynthesis	40	4 of 10
66794	elloramycin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	phenol degradation	40	8 of 20
66794	3-chlorocatechol degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	d-xylose degradation	36.36	4 of 11
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	polyamine pathway	34.78	8 of 23
66794	octane oxidation	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	pantothenate biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	urea cycle	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Condition	#Saline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1983	water from salt pit	Lagoa Vermelha, near Rio de Janerio	Brazil	BRA	Middle and South America
67770	Water from salt pit

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1983	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16571v3 assembly for Rubinisphaera brasiliensis DSM 5305	complete	GCA_000165715	756272.5	649633083	756272	97.26

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	P.brasiliensis partial 16S rRNA gene (DSM 5305)	X81949	1200	756272
20218	P.brasiliensis 16S rRNA gene	X85247	1092	756272
1983	Planctomyces brasiliensis (strain DSM 5305T) 16S rRNA gene, partial	AJ231190	1447	756272

GC content

@ref	GC-content (mol%)	Method
1983	55.1-57.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM16571v3 assembly for Rubinisphaera brasiliensis DSM 5305
BV-BRC: 756272.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.46	no
125439	motility	BacteriaNetⓘ	yes	51.02	no
125439	gram_stain	BacteriaNetⓘ	negative	87.84	no
125439	spore_formation	BacteriaNetⓘ	no	98.91	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rubinisphaera brasiliensis DSM 5305 DSM 5305
NCBI: GCA_000165715.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.98	no
125438	anaerobic	anaerobicⓘ	no	90.78	no
125438	aerobic	aerobicⓘ	yes	78.51	no
125438	spore-forming	spore-formingⓘ	no	81.60	no
125438	thermophilic	thermophileⓘ	no	92.86	yes
125438	flagellated	motile2+ⓘ	no	50.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-based reclassification of Kitasatospora niigatensis as a later heterotypic synonym of Kitasatospora cineracea Tajima et al. (2001).	Bouznada K, Belaouni HA, Meklat A.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01884-3	2023
	Bioprocess development for microbial production and purification of cellobiose lipids by the smut fungus Ustilago maydis DSM 4500.	Valkenburg AD, Teke GM, van Rensburg E, Pott RWM.	Bioprocess Biosyst Eng	10.1007/s00449-025-03127-3	2025
	Gluten-Free Rice Malt Extract Powder: Pilot-Scale Production, Characterization, and Food Applications.	Puangwerakul Y, Soithongsuk S, Wongwailikhit K.	Molecules	10.3390/molecules30214279	2025
	The fed-batch production of mannosylerythritol lipids by Ustilago maydis DSM 4500 from hydrophilic carbon sources.	Valkenburg AD, Teke GM, Pott RWM, van Rensburg E.	Bioprocess Biosyst Eng	10.1007/s00449-024-03084-3	2024
Genetics	Genomic Analysis of Kitasatospora setae to Explore Its Biosynthetic Potential Regarding Secondary Metabolites.	Xue Y, Zhou Z, Feng F, Zhao H, Tan S, Li J, Wu S, Ju Z, He S, Ding L.	Antibiotics (Basel)	10.3390/antibiotics13050459	2024
	Genome sequences of Rhizopogon roseolus, Mariannaea elegans, Myrothecium verrucaria, and Sphaerostilbella broomeana and the identification of biosynthetic gene clusters for fungal peptide natural products.	Vogt E, Field CM, Sonderegger L, Kunzler M.	G3 (Bethesda)	10.1093/g3journal/jkac095	2022
	Microbial removal of nutrients from anaerobic digestate: assessing product-coupled and non-product-coupled approaches.	Agyeman-Duah E, Okonkwo CC, Ujor VC.	Front Microbiol	10.3389/fmicb.2023.1299402	2023
Metabolism	In silico characterization of a novel putative aerotaxis chemosensory system in the myxobacterium, Corallococcus coralloides.	Sharma G, Parales R, Singer M.	BMC Genomics	10.1186/s12864-018-5151-6	2018
	New piperazine derivatives helvamides B-C from the marine-derived fungus Penicillium velutinum ZK-14 uncovered by OSMAC (One Strain Many Compounds) strategy.	Borkunov GV, Leshchenko EV, Berdyshev DV, Popov RS, Chingizova EA, Shlyk NP, Gerasimenko AV, Kirichuk NN, Khudyakova YV, Chausova VE, Antonov AS, Kalinovsky AI, Chingizov AR, Yurchenko EA, Isaeva MP, Yurchenko AN.	Nat Prod Bioprospect	10.1007/s13659-024-00449-9	2024
Genetics	COG database update: focus on microbial diversity, model organisms, and widespread pathogens.	Galperin MY, Wolf YI, Makarova KS, Vera Alvarez R, Landsman D, Koonin EV.	Nucleic Acids Res	10.1093/nar/gkaa1018	2021
	The Effect of Lactiplantibacillus plantarum BX62 Alone or in Combination with Chitosan on the Qualitative Characteristics of Fresh-Cut Apples during Cold Storage.	Zhao Q, Tang S, Fang X, Wang Z, Jiang Y, Guo X, Guo X, Zhu J, Zhang Y.	Microorganisms	10.3390/microorganisms9112404	2021
	Promising Application, Efficient Production, and Genetic Basis of Mannosylerythritol Lipids.	Liu D, Liu G, Liu S.	Biomolecules	10.3390/biom14050557	2024
Genetics	DciA is an ancestral replicative helicase operator essential for bacterial replication initiation.	Brezellec P, Vallet-Gely I, Possoz C, Quevillon-Cheruel S, Ferat JL.	Nat Commun	10.1038/ncomms13271	2016
	Reduction of Chemical and Biological Oxygen Demands from Oil Wastes via Oleaginous Fungi: An Attempt to Convert Food by Products to Essential Fatty Acids.	Mirbagheri M, Nahvi I, Emamzade R.	Iran J Biotechnol	10.15171/ijb.1026	2015
	Immunomodulatory and anti-inflammatory effects of probiotics in multiple sclerosis: a systematic review.	Morshedi M, Hashemi R, Moazzen S, Sahebkar A, Hosseinifard ES.	J Neuroinflammation	10.1186/s12974-019-1611-4	2019
	Simultaneous enzymatic synthesis of gluconic acid and sorbitol: production, purification, and application of glucose-fructose oxidoreductase and gluconolactonase.	Nidetzky B, Furlinger M, Gollhofer D, Haug I, Haltrich D, Kulbe KD.	Appl Biochem Biotechnol	10.1007/bf02920423	1997
Metabolism	Genomics- and Metabolomics-Based Investigation of the Deep-Sea Sediment-Derived Yeast, Rhodotorula mucilaginosa 50-3-19/20B.	Buedenbender L, Kumar A, Blumel M, Kempken F, Tasdemir D.	Mar Drugs	10.3390/md19010014	2020
Metabolism	Evolutionary gradient of predicted nuclear localization signals (NLS)-bearing proteins in genomes of family Planctomycetaceae.	Guo M, Yang R, Huang C, Liao Q, Fan G, Sun C, Lee SM.	BMC Microbiol	10.1186/s12866-017-0981-y	2017
Genetics	Planctomycetes as Novel Source of Bioactive Molecules.	Graca AP, Calisto R, Lage OM.	Front Microbiol	10.3389/fmicb.2016.01241	2016
Biotechnology	In silico Proteomic Analysis Provides Insights Into Phylogenomics and Plant Biomass Deconstruction Potentials of the Tremelalles.	Aliyu H, Gorte O, Zhou X, Neumann A, Ochsenreither K.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00226	2020
	Current Pretreatment/Cell Disruption and Extraction Methods Used to Improve Intracellular Lipid Recovery from Oleaginous Yeasts.	Zainuddin MF, Fai CK, Ariff AB, Rios-Solis L, Halim M.	Microorganisms	10.3390/microorganisms9020251	2021
	Nickel-resistance determinants in Acidiphilium sp. PM identified by genome-wide functional screening.	San Martin-Uriz P, Mirete S, Alcolea PJ, Gomez MJ, Amils R, Gonzalez-Pastor JE.	PLoS One	10.1371/journal.pone.0095041	2014
	Sustainable carbon sources for microbial organic acid production with filamentous fungi.	Dorsam S, Fesseler J, Gorte O, Hahn T, Zibek S, Syldatk C, Ochsenreither K.	Biotechnol Biofuels	10.1186/s13068-017-0930-x	2017
	Antibacterial, antifungal and antioxidant activities of the ethanol extract of the stem bark of Clausena heptaphylla.	Fakruddin M, Mannan KS, Mazumdar RM, Afroz H.	BMC Complement Altern Med	10.1186/1472-6882-12-232	2012
Genetics	Identification of proteins likely to be involved in morphogenesis, cell division, and signal transduction in Planctomycetes by comparative genomics.	Jogler C, Waldmann J, Huang X, Jogler M, Glockner FO, Mascher T, Kolter R.	J Bacteriol	10.1128/jb.01325-12	2012
	Genomic and Biochemical Analysis of the Diaminopimelate and Lysine Biosynthesis Pathway in Verrucomicrobium spinosum: Identification and Partial Characterization of L,L-Diaminopimelate Aminotransferase and UDP-N-Acetylmuramoylalanyl-D-glutamyl-2,6-meso-Diaminopimelate Ligase.	Nachar VR, Savka FC, McGroty SE, Donovan KA, North RA, Dobson RC, Buckley LJ, Hudson AO.	Front Microbiol	10.3389/fmicb.2012.00183	2012
Phylogeny	A marine sulfate-reducing bacterium producing multiple antibiotics: biological and chemical investigation.	Zhang Y, Mu J, Gu X, Zhao C, Wang X, Xie Z.	Mar Drugs	10.3390/md7030341	2009
Phylogeny	The origin of multicellularity in cyanobacteria.	Schirrmeister BE, Antonelli A, Bagheri HC.	BMC Evol Biol	10.1186/1471-2148-11-45	2011
	Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly.	Liu T, Tsai CH, Lee WB, Chiang JH.	PLoS One	10.1371/journal.pone.0069503	2013
Enzymology	Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon.	Fuerst JA, Gwilliam HG, Lindsay M, Lichanska A, Belcher C, Vickers JE, Hugenholtz P.	Appl Environ Microbiol	10.1128/aem.63.1.254-262.1997	1997
	Uncovering the biotechnological capacity of marine and brackish water Planctomycetota.	Vitorino IR, Pinto E, Martin J, Mackenzie TA, Ramos MC, Sanchez P, de la Cruz M, Vicente F, Vasconcelos V, Reyes F, Lage OM.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01923-z	2024
Genetics	Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae.	Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, Palaniappan K, Jeffries CD, Hauser L, Land M, Mwirichia R, Rohde M, Abt B, Detter JC, Woyke T, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.1186/1944-3277-9-10	2014
	Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of environmental organisms: the Planctomycetes paradigm.	Cayrou C, Raoult D, Drancourt M	Environ Microbiol Rep	10.1111/j.1758-2229.2010.00176.x	2010
	Planctoellipticum variicoloris gen. nov., sp. nov., a novel member of the family Planctomycetaceae isolated from wastewater of the aeration lagoon of a sugar processing plant in Northern Germany.	Wurzbacher CE, Haufschild T, Hammer J, van Teeseling MCF, Kallscheuer N, Jogler C.	Sci Rep	10.1038/s41598-024-56373-y	2024
Phylogeny	Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov.	Kaur J, Verma M, Lal R.	Int J Syst Evol Microbiol	10.1099/ijs.0.017491-0	2011
Phylogeny	Rubinisphaera margarita sp. nov., a novel planctomycete isolated from marine sediments collected in the Portuguese north coast.	Vitorino IR, Lobo-da-Cunha A, Vasconcelos V, Lage OM	Int J Syst Evol Microbiol	10.1099/ijsem.0.005425	2022
Phylogeny	Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes.	Fukunaga Y, Kurahashi M, Sakiyama Y, Ohuchi M, Yokota A, Harayama S	J Gen Appl Microbiol	10.2323/jgam.55.267	2009

References

#1983	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5305
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rubinisphaera brasiliensis (DSM 5305, ATCC 49424, IFAM 1448)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000165715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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