Name: Thiomicrorhabdus psychrophila SVAL-D
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11932

Type strain:

Species: Thiomicrorhabdus psychrophila

Strain Designation: SVAL-D

Culture col. no.: DSM 13453, ATCC 700954

Strain history: <- K. Ravenschlag, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; SVAL-D <- K. Ravenschlag {1998}

NCBI tax ID(s): 146829 (species)

SI-ID 44229

ATCC 700954, DSM 13453

Section

Thiomicrorhabdus psychrophila SVAL-D is an aerobe, chemolithoautotroph, psychrophilic bacterium that was isolated from marine Arctic sediments.

Gram-negative
motile
rod-shaped
aerobe
chemolithoautotroph
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrorhabdus*
	Species	**Thiomicrorhabdus psychrophila**
	Full Scientific Name (LPSN)	Thiomicrorhabdus psychrophila (Knittel et al. 2005) Boden et al. 2017

Synonym

Thiomicrospira psychrophila

Information on morphological and physiological properties Morphology

[Ref.: #31345]	Gram stain	negative
[Ref.: #43182]	Gram stain	negative

[Ref.: #31345]	Cell length	1.5 µm
[Ref.: #43182]	Cell length	1.3-1.7 µm

[Ref.: #31345]	Cell width	0.55 µm
[Ref.: #43182]	Cell width	0.5-0.6 µm

[Ref.: #31345]	Cell shape	rod-shaped
[Ref.: #43182]	Cell shape	rod-shaped

[Ref.: #31345]	Motility	yes
[Ref.: #43182]	Motility	yes

[Ref.: #43182]	Flagellum arrangement	monotrichous

[Ref.: #5049]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5049]

Culture medium

THIOMICROSPIRA PSYCHROPHILA MEDIUM (DSMZ Medium 142a)

[Ref.: #5049]

Culture medium growth

[Ref.: #5049]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5049]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5049]	growth	15 °C
[Ref.: #31345]	optimum	15 °C
[Ref.: #43182]	maximum	20.8 °C
[Ref.: #43182]	minimum	-2 °C
[Ref.: #43182]	optimum	14.6-15.4 °C

[Ref.: #5049]	Temperature range	psychrophilic
[Ref.: #31345]	Temperature range	psychrophilic
[Ref.: #43182]	Temperature range	psychrophilic

		pH
[Ref.: #43182]	maximum	9
[Ref.: #43182]	minimum	6.5
[Ref.: #31345]	optimum	8
[Ref.: #43182]	optimum	7.5-8.5
[Ref.: #31345]	growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31345]

Oxygen tolerance

aerobe

[Ref.: #43182]

Nutrition type

chemolithoautotroph

[Ref.: #43182]	Type of spore	endospore
[Ref.: #43182]	Ability of spore formation	no
[Ref.: #43182]	Type of spore	exospore (microbial cyst)
[Ref.: #43182]	Ability of spore formation	no
[Ref.: #31345]	Ability of spore formation	no

	Salt		Salt conc.
[Ref.: #31345]	NaCl	optimum	1.45	%
[Ref.: #43182]	NaCl	optimum	0.25	M
[Ref.: #43182]	NaCl	minimum	0.04	M
[Ref.: #43182]	NaCl	maximum	1.24	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43182]	ammonium ChEBI	+	nitrogen source
[Ref.: #43182]	dihydrogen ChEBI	-	electron donor
[Ref.: #43182]	dioxygen ChEBI	+	electron acceptor
[Ref.: #43182]	iron ChEBI	-	electron donor
[Ref.: #43182]	manganese ChEBI	-	electron donor
[Ref.: #43182]	nitrate ChEBI	-	reduction
[Ref.: #43182]	sulfide ChEBI	+	electron donor
[Ref.: #43182]	sulfite ChEBI	-	electron donor
[Ref.: #43182]	tetrathionate ChEBI	+	electron donor
[Ref.: #43182]	thiocyanate ChEBI	-	electron donor
[Ref.: #43182]	thiosulfate ChEBI	+	electron donor
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43182]		cobalamin ChEBI	yes
[Ref.: #43182]		elemental sulfur ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43182]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43182]	hydrogenase	-	1.12.99.6
[Ref.: #43182]	nitrogenase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5049]	Sample type/isolated from	marine Arctic sediments
[Ref.: #5049]	Geographic location (country and/or sea, region)	coast of Svalbard
[Ref.: #5049]	Country	Norway
[Ref.: #5049]	Country ISO 3 Code	NOR
[Ref.: #5049]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Polar

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ404732 (>99% sequence identity) for Thiomicrorhabdus from Microbeatlas

Aquatic Samples	105
Soil Samples	5
Animal Samples	22
Plant Samples
Total Samples	132

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5049]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5049]	Thiomicrospira sp. SVAL-D 16S rRNA gene	AJ404732	1432	ENA	146829 tax ID

[Ref.: #5049]

GC-content

42.5 mol%

Availability in culture collections External links

[Ref.: #5049]

Culture collection no.

DSM 13453, ATCC 700954

[Ref.: #81146]

SI-ID 44229

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Galenea microaerophila gen. nov., sp. nov., a mesophilic, microaerophilic, chemosynthetic, thiosulfate-oxidizing bacterium isolated from a shallow-water hydrothermal vent.	Giovannelli D, Grosche A, Starovoytov V, Yakimov M, Manini E, Vetriani C	Int J Syst Evol Microbiol	10.1099/ijs.0.040808-0	2012	*
Phylogeny	Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychrophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacteria isolated from marine Arctic sediments.	Knittel K, Kuever J, Meyerdierks A, Meinke R, Amann R, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijs.0.63362-0	2005	*

References

#5049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13453

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31345

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27659 (see below)

#43182

Rich Boden, Kathleen M. Scott, John Williams, Sydney Russel, Kirsten Antonen, Alex W. Rae and Lee P. Hutt: An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira. IJSEM 67: 1140 - 1151 2017 ( DOI 10.1099/ijsem.0.001855 , PubMed 28581925 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81146

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44229.1 )

#27659

IJSEM 781 2005 ( DOI 10.1099/ijs.0.63362-0 , PubMed 15774662 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thiomicrorhabdus psychrophila in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF