Thiomicrospira cyclica | Type strain | DSM 14477, JCM 11371, ALM 1 | BacDiveID:11912

Strain identifier

BacDive ID: 11912

Type strain:

Species: Thiomicrospira cyclica

Culture col. no.: DSM 14477, JCM 11371, ALM 1

Strain history: <- D. Y. Sorokin; ALM1

NCBI tax ID(s): 147268 (species)

SI-ID 101019

DSM 14477, JCM 11371

Section

Thiomicrospira cyclica DSM 14477 is an obligate aerobe, chemolithoautotroph, mesophilic bacterium that was isolated from water.

motile
chemolithoautotroph
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrospira*
	Species	**Thiomicrospira cyclica**
	Full Scientific Name (LPSN)	Thiomicrospira cyclica (Sorokin et al. 2002) Boden et al. 2017

	Synonym	Thioalkalimicrobium cyclicum
	Synonym	Thialkalimicrobium cyclicum

Information on morphological and physiological properties Morphology

[Ref.: #43182]	Cell length	1 µm

[Ref.: #43182]	Cell width	0.3-0.4 µm

[Ref.: #43182]	Motility	yes

[Ref.: #43182]	Colony color	reddish
[Ref.: #43182]	Cultivation medium used	Thiosulfate agar

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5370]			growth	28 °C

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43182]			maximum	10.6
[Ref.: #43182]			minimum	7.5
[Ref.: #43182]			optimum	9.5

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

obligate aerobe

Nutrition type

chemolithoautotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43182]		NaCl		maximum	1.5	M

Observation

produce carboxysomes

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43182]		dihydrogen ChEBI	-	electron donor
[Ref.: #43182]		elemental sulfur ChEBI	+	electron donor
[Ref.: #43182]		iron ChEBI	-	electron donor
[Ref.: #43182]		manganese ChEBI	-	electron donor
[Ref.: #43182]		sulfide ChEBI	+	electron donor
[Ref.: #43182]		sulfite ChEBI	-	electron donor
[Ref.: #43182]		tetrathionate ChEBI	+	energy source
[Ref.: #43182]		tetrathionate ChEBI	+	electron donor
[Ref.: #43182]		thiocyanate ChEBI	-	electron donor
[Ref.: #43182]		thiosulfate ChEBI	+	electron donor
[Ref.: #43182]		trithionate ChEBI	+	electron donor
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43182]		cobalamin ChEBI	yes
[Ref.: #43182]		elemental sulfur ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43182]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5370]	Sample type/isolated from	water
[Ref.: #5370]	Geographic location (country and/or sea, region)	California, Lake Mono
[Ref.: #5370]	Country	USA
[Ref.: #5370]	Country ISO 3 Code	USA
[Ref.: #5370]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5370]	Thioalkalimicrobium cyclum 16S ribosomal RNA gene, partial sequence	AF329082	1500	ENA	717773 tax ID

[Ref.: #5370]	GC-content	49.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #43182]	GC-content	47 mol%

Availability in culture collections External links

Culture collection no.

DSM 14477, JCM 11371, ALM 1

SI-ID 101019

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing gamma-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).	Kappler U, Davenport K, Beatson S, Lapidus A, Pan C, Han C, Montero-Calasanz Mdel C, Land M, Hauser L, Rohde M, Goker M, Ivanova N, Woyke T, Klenk HP, Kyrpides NC	Stand Genomic Sci	10.1186/s40793-016-0162-x	2016	*
Phylogeny	Thioalkalimicrobium cyclicum sp. nov. and Thioalkalivibrio jannaschii sp. nov., novel species of haloalkaliphilic, obligately chemolithoautotrophic sulfur-oxidizing bacteria from hypersaline alkaline Mono Lake (California).	Sorokin DY, Gorlenko VM, Tourova TP, Tsapin AI, Nealson KH, Kuenen GJ	Int J Syst Evol Microbiol	10.1099/00207713-52-3-913	2002	*

References

#5370

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14477

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43182

Rich Boden, Kathleen M. Scott, John Williams, Sydney Russel, Kirsten Antonen, Alex W. Rae and Lee P. Hutt: An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira. IJSEM 67: 1140 - 1151 2017 ( DOI 10.1099/ijsem.0.001855 , PubMed 28581925 )

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#81126

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101019.1 )

* These data were automatically processed and therefore are not curated

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