Name: Methylophaga marina 222
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11903

Type strain:

Species: Methylophaga marina

Strain Designation: 222

Culture col. no.: DSM 5689, ATCC 35842, NCIMB 2244, JCM 6886, CIP 104551, IAM 14932, KCTC 2857, NBRC 102421, VKM B-2056, LMG 6788

Strain history: CIP <- 1995, M. Janvier and F. Gasser, Inst. Pasteur, Paris, France: strain 222

NCBI tax ID(s): 1122235 (strain), 45495 (species)

SI-ID 3569

LMG 6788, ATCC 35842, NCMB 2244, CIP 104551, JCM 6886, NCIMB 2244, DSM 5689, VKM B-2056, KCTC 2857, IAM 14932, NBRC 102421

Other strains from Methylophaga marina

M. marina 232, CIP 104561
M. marina 290, CIP 104562
M. marina 201, CIP 106899
M. marina 172, CIP 106897
M. marina 173, CIP 106898
M. marina 312, CIP 106900

Section

Methylophaga marina 222 is a mesophilic bacterium that was isolated from marine muds.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Methylophaga*
	Species	**Methylophaga marina**
	Full Scientific Name (LPSN)	Methylophaga marina Janvier et al. 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2286]

Culture medium

MEDIUM FOR MARINE METHYLOTROPHS (DSMZ Medium 750)

[Ref.: #2286]

Culture medium growth

[Ref.: #2286]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2286]

Culture medium composition

expand / minimize

[Ref.: #35693]

Culture medium

MEDIUM 138 - for Methylophaga thalassica and Methylophaga marina

[Ref.: #35693]

Culture medium growth

[Ref.: #35693]

Culture medium composition

expand / minimize

[Ref.: #120799]

Culture medium

CIP Medium 138

[Ref.: #120799]

Culture medium growth

[Ref.: #120799]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2286]	growth	28 °C
[Ref.: #35693]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2286]	Temperature range	mesophilic
[Ref.: #35693]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2286]	Sample type/isolated from	marine muds

[Ref.: #67770]	Sample type/isolated from	Marine mud

[Ref.: #120799]	Sample type/isolated from	Environment, Marine mud
[Ref.: #120799]	Geographic location (country and/or sea, region)	Etel river estuary
[Ref.: #120799]	Country	France
[Ref.: #120799]	Country ISO 3 Code	FRA
[Ref.: #120799]	Continent	Europe
[Ref.: #120799]	Isolation date	1976
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2286]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120799]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	M.marina gene for 16S ribosomal RNA (ATCC 35842)	X87338	1488	ENA	45495 tax ID	*
[Ref.: #20218]	M.marina mRNA for 16S ribosomal RNA	X95459	1490	ENA	45495 tax ID	*
[Ref.: #20218]	Methylophaga marina gene for 16S rRNA, partial sequence, strain: NBRC 102421	AB681777	1461	ENA	45495 tax ID	*

[Ref.: #67770]	GC-content	44.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	43 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #2286]

Culture collection no.

DSM 5689, ATCC 35842, NCIMB 2244, JCM 6886, CIP 104551, IAM 14932, KCTC 2857, NBRC 102421, VKM B-2056, LMG 6788

[Ref.: #81118]

SI-ID 3569

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Vitamin B12-independent strains of Methylophaga marina isolated from Red Sea algae].	Li TsD, Doronina NV, Ivanova EG, Trotsenko IuA	Mikrobiologiia		2007	*

References

#2286

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5689

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35693 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#81118

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3569.1 )

#120799 Collection of Institut Pasteur ; Curators of the CIP; CIP 104551
* These data were automatically processed and therefore are not curated

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