Name: Mesorhizobium shangrilense DSM 21850
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11895

Type strain:

Species: Mesorhizobium shangrilense

Culture col. no.: DSM 21850, CCBAU 65327, HAMBI 3050, LMG 24762

Strain history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing <- Y. L. Lu et al.

NCBI tax ID(s): 460060 (species)

SI-ID 364838

HAMBI 3050, LMG 24762, DSM 21850

Section

Mesorhizobium shangrilense DSM 21850 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodules of Caragana bicolor.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium shangrilense**
	Full Scientific Name (LPSN)	Mesorhizobium shangrilense Lu et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29149]	Gram stain	negative

[Ref.: #29149]	Cell length	2 µm

[Ref.: #29149]	Cell width	0.45 µm

[Ref.: #29149]	Cell shape	rod-shaped

[Ref.: #29149]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15989]

Culture medium

YMA-MEDIUM (MODIFIED) (DSMZ Medium 1031a)

[Ref.: #15989]

Culture medium growth

[Ref.: #15989]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15989]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15989]	growth	28 °C
[Ref.: #29149]	growth	10-37 °C
[Ref.: #29149]	optimum	28 °C

[Ref.: #15989]	Temperature range	mesophilic
[Ref.: #29149]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29149]			optimum	7
[Ref.: #29149]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29149]

Oxygen tolerance

aerobe

[Ref.: #29149]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29149]		NaCl		growth	02-03	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29149]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #29149]	arabinose ChEBI	+	carbon source
[Ref.: #29149]	arginine ChEBI	+	carbon source
[Ref.: #29149]	aspartate ChEBI	+	carbon source
[Ref.: #29149]	citrate ChEBI	+	carbon source
[Ref.: #29149]	fructose ChEBI	+	carbon source
[Ref.: #29149]	glucose ChEBI	+	carbon source
[Ref.: #29149]	glutamate ChEBI	+	carbon source
[Ref.: #29149]	malate ChEBI	+	carbon source
[Ref.: #29149]	maltose ChEBI	+	carbon source
[Ref.: #29149]	mannose ChEBI	+	carbon source
[Ref.: #29149]	phenylalanine ChEBI	+	carbon source
[Ref.: #29149]	rhamnose ChEBI	+	carbon source
[Ref.: #29149]	sorbitol ChEBI	+	carbon source
[Ref.: #29149]	succinate ChEBI	+	carbon source
[Ref.: #29149]	sucrose ChEBI	+	carbon source
[Ref.: #29149]	threonine ChEBI	+	carbon source
[Ref.: #29149]	trehalose ChEBI	+	carbon source
[Ref.: #29149]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29149]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29149]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29149]		catalase	+	1.11.1.6
[Ref.: #29149]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15989]	Sample type/isolated from	root nodules of Caragana bicolor
[Ref.: #15989]	Host species	Caragana bicolor
[Ref.: #15989]	Geographic location (country and/or sea, region)	Yunnan province, Deqin city
[Ref.: #15989]	Country	China
[Ref.: #15989]	Country ISO 3 Code	CHN
[Ref.: #15989]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU074203 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	5652
Soil Samples	18576
Animal Samples	4689
Plant Samples	1771
Total Samples	30688

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15989]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15989]	Mesorhizobium shangrilense strain CCBAU 65327 16S ribosomal RNA gene, partial sequence	EU074203	1344	ENA	460060 tax ID

[Ref.: #15989]

GC-content

61.37 mol%

Availability in culture collections External links

[Ref.: #15989]

Culture collection no.

DSM 21850, CCBAU 65327, HAMBI 3050, LMG 24762

[Ref.: #81112]

SI-ID 364838

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.	Jung YJ, Kim HJ, Hur M	Antonie Van Leeuwenhoek	10.1007/s10482-020-01435-0	2020	*
Phylogeny	Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.	De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000430	2015	*
Phylogeny	Mesorhizobium sangaii sp. nov., isolated from the root nodules of Astragalus luteolus and Astragalus ernestii.	Zhou S, Li Q, Jiang H, Lindstrom K, Zhang X	Int J Syst Evol Microbiol	10.1099/ijs.0.044685-0	2013	*
Phylogeny	Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species.	Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZ	Int J Syst Evol Microbiol	10.1099/ijs.0.007393-0	2009	*

References

#15989

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21850

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29149

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25573 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81112

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364838.1 )

#25573

IJSEM 3012 2009 ( DOI 10.1099/ijs.0.007393-0 , PubMed 19643905 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mesorhizobium shangrilense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF