Name: Mesorhizobium loti ORS664T
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11880

Type strain:

Species: Mesorhizobium loti

Strain Designation: ORS664T

Culture col. no.: DSM 2626, ATCC 700743, CCUG 56774, LMG 6125, IFO 14779, NBRC 14779, NZP 2213, JCM 21464, ATCC 33669, CCUG 27878, HAMBI 1129, IAM 14993, ICMP 4682, LMG 17826, NCIMB 12074, OUT 30009, CIP 107326

Strain history: CIP <- 2002, P. de Lajudie Montpellier, France: strain ORS664T <- 1984, LMG <- 1984, B. Jarvis, Rhizobium loti <- R. Greenwood: strain NZP 2213

NCBI tax ID(s): 381 (species)

SI-ID 264230

LMG 17826, ATCC 33669, DSM 2626, ICMP 4682, LMG 6125, NCIB 12074, PDDCC 4682, ATCC 700743, HAMBI 1129, CCUG 27878, NCIMB 12074, IAM13588, IFO 14779, CECT 4120, CCRC 13521, IAM 14993, NBRC 14779, BCRC 13521, CCT 4063, KACC 10644, JCM 21464, CGMCC 1.2559, CFBP 6715, CFBP 5556, CIP 107326, LMG 28313, CECT 8631, CECT 8632, CCUG 56774

Other strains from Mesorhizobium loti

M. loti DSM 2627, NZP 2037, JCM 20975, ...
M. loti DSM 2628, NZP 2238
M. loti Lp22, DSM 5236
M. loti DSM 6046, ATCC 35173, NZP 2196
M. loti JCM 20972, IAM 13630, LMG 4284, ...
M. loti JCM 20976, IAM 13634, LMG 6126, ...
M. loti JCM 21556, IAM 15095, IFO 13336, ...
M. loti JCM 21557, IAM 15096, IFO 14996, ...
M. loti JCM 21558, IAM 15097, IFO 15000, ...

Section

Mesorhizobium loti ORS664T is a mesophilic, motile bacterium that was isolated from Lotus corniculatus nodule.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium loti**
	Full Scientific Name (LPSN)	Mesorhizobium loti (Jarvis et al. 1982) Jarvis et al. 1997

Synonym

Rhizobium loti

Information on morphological and physiological properties Morphology

[Ref.: #120655]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.972

[Ref.: #120655]	Cell shape	rod-shaped

[Ref.: #120655]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %91.598

[Ref.: #1173]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1173]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1173]

Culture medium growth

[Ref.: #1173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1173]

Culture medium composition

expand / minimize

[Ref.: #1173]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #1173]

Culture medium growth

[Ref.: #1173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1173]

Culture medium composition

expand / minimize

[Ref.: #40706]

Culture medium

MEDIUM 296 - for Rhizobium

[Ref.: #40706]

Culture medium growth

[Ref.: #40706]

Culture medium composition

expand / minimize

[Ref.: #120655]

Culture medium

CIP Medium 296

[Ref.: #120655]

Culture medium growth

[Ref.: #120655]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1173]		growth	25 °C
[Ref.: #1173]		growth	26 °C
[Ref.: #40706]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #120655]		growth	10-30 °C
[Ref.: #120655]	no	growth	37 °C
[Ref.: #120655]	no	growth	41 °C
[Ref.: #120655]	no	growth	45 °C

[Ref.: #1173]	Temperature range	mesophilic
[Ref.: #40706]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120655]	Temperature range	mesophilic
[Ref.: #120655]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Salt	Tested relation		Salt conc.
[Ref.: #120655]	NaCl	no	growth	0	%
[Ref.: #120655]	NaCl	no	growth	2	%
[Ref.: #120655]	NaCl	no	growth	4	%
[Ref.: #120655]	NaCl	no	growth	6	%
[Ref.: #120655]	NaCl	no	growth	8	%
[Ref.: #120655]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120655]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120655]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120655]	nitrate ChEBI	-	reduction
[Ref.: #120655]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #120655]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120655]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #120655]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #120655]	acetoin ChEBI	-
[Ref.: #120655]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120655]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120655]	amylase	+
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #120655]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120655]	caseinase	-	3.4.21.50
[Ref.: #120655]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #1173]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #120655]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120655]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120655]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #120655]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120655]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120655]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120655]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120655]	oxidase	-
[Ref.: #120655]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120655]	tryptophan deaminase	-
[Ref.: #120655]	tween esterase	-
[Ref.: #120655]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #1173]	23572	-	-	-	-	+	-	-	+/-	+	+	+	+	+	+	-	-	-	+	-	-	+
[Ref.: #1173]	23571	-	-	-	-	-	-	-	+	-	-	-	+/-	+/-	-	-	-	-	+/-	-	-	not determinedn.d.
[Ref.: #1173]	23570	-	-	-	-	-	-	-	+	+	+/-	-	+	+/-	+	+/-	-	+/-	+	-	-	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120655]	10935	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120655]	2155	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120655]	10264	-	+	+	+	-	+	-	-	+	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1173]	Sample type/isolated from	Lotus corniculatus nodule
[Ref.: #1173]	Host species	Lotus corniculatus
[Ref.: #1173]	Geographic location (country and/or sea, region)	North island, Palmerston, Milson
[Ref.: #1173]	Country	New Zealand
[Ref.: #1173]	Country ISO 3 Code	NZL
[Ref.: #1173]	Continent	Australia and Oceania

[Ref.: #61084]	Sample type/isolated from	Birdsfoot trefoil,lotus corniculatus,root nodule
[Ref.: #61084]	Country	New Zealand
[Ref.: #61084]	Country ISO 3 Code	NZL
[Ref.: #61084]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Root nodule on birds-foot trefoil (Lotus corniculatus)
[Ref.: #67770]	Host species	Lotus corniculatus
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania

[Ref.: #120655]	Sample type/isolated from	Lotus corniculatus nodule
[Ref.: #120655]	Country	New Zealand
[Ref.: #120655]	Country ISO 3 Code	NZL
[Ref.: #120655]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X67229 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	5652
Soil Samples	18576
Animal Samples	4689
Plant Samples	1771
Total Samples	30688

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1173]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120655]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1173]	Mesorhizobium loti partial 16S rRNA gene, strain LMG 6125	X67229	1437	ENA	381 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium loti DSM 2626	GCA_003148495	scaffold	GenBank	381 tax ID	*
[Ref.: #66792]	Mesorhizobium jarvisii ATCC 33669	GCA_013170785	complete	GenBank	1777867 tax ID	*
[Ref.: #66792]	Mesorhizobium loti LMG 6125	GCA_003024615	contig	GenBank	381 tax ID	*
[Ref.: #66792]	Mesorhizobium jarvisii strain ATCC 700743	1777867.5	complete	PATRIC	1777867 tax ID	*
[Ref.: #66792]	Mesorhizobium loti strain DSM 2626	381.89	wgs	PATRIC	381 tax ID	*
[Ref.: #66792]	Mesorhizobium loti strain LMG 6125	381.88	wgs	PATRIC	381 tax ID	*

[Ref.: #1173]

GC-content

59.0-64.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesorhizobium jarvisii ATCC 33669 NCBI: GCA_013170785.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium jarvisii ATCC 33669 NCBI: GCA_013170785.1
[Ref.: #69480]	motile	yes	83.831	no
[Ref.: #69480]	flagellated	no	84.259	no
[Ref.: #69480]	gram-positive	no	97.968	no
[Ref.: #69480]	anaerobic	no	98.924	no
[Ref.: #69480]	aerobic	yes	92.717	no
[Ref.: #69480]	halophile	no	93.547	no
[Ref.: #69480]	spore-forming	no	93.921	no
[Ref.: #69480]	glucose-util	yes	91.294	no
[Ref.: #69480]	thermophile	no	99.308	yes
[Ref.: #69480]	glucose-ferment	no	91.089	yes

Availability in culture collections External links

[Ref.: #1173]

Culture collection no.

DSM 2626, ATCC 700743, CCUG 56774, LMG 6125, IFO 14779, NBRC 14779, NZP 2213, JCM 21464, ATCC 33669, CCUG 27878, HAMBI 1129, IAM 14993, ICMP 4682, LMG 17826, NCIMB 12074, OUT 30009, CIP 107326

[Ref.: #81097]

SI-ID 264230

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.	Jung YJ, Kim HJ, Hur M	Antonie Van Leeuwenhoek	10.1007/s10482-020-01435-0	2020	*
Phylogeny	Reclassification of strains MAFF 303099T and R7A into Mesorhizobiumjaponicum sp. nov.	Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Igual JM, Sanjuan J, Leon-Barrios M, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001448	2016	*
Phylogeny	Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov.	Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.000164	2015	*
Phylogeny	Mesorhizobium sangaii sp. nov., isolated from the root nodules of Astragalus luteolus and Astragalus ernestii.	Zhou S, Li Q, Jiang H, Lindstrom K, Zhang X	Int J Syst Evol Microbiol	10.1099/ijs.0.044685-0	2013	*
Phylogeny	Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria.	Doronina NV, Kaparullina EN, Trotsenko YA, Nortemann B, Bucheli-Witschel M, Weilenmann HU, Egli T	Int J Syst Evol Microbiol	10.1099/ijs.0.003152-0	2009	*
Phylogeny	Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species.	Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZ	Int J Syst Evol Microbiol	10.1099/ijs.0.007393-0	2009	*
Metabolism	Functional analysis of three AHL autoinducer synthase genes in Mesorhizobium loti reveals the important role of quorum sensing in symbiotic nodulation.	Yang M, Sun K, Zhou L, Yang R, Zhong Z, Zhu J	Can J Microbiol	10.1139/w08-128	2009	*
Phylogeny	Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina).	Estrella MJ, Munoz S, Soto MJ, Ruiz O, Sanjuan J	Appl Environ Microbiol	10.1128/AEM.02405-08	2008	*
Enzymology	Alteration of O-specific polysaccharide structure of symbiotically defective Mesorhizobium loti mutant 2213.1 derived from strain NZP2213.	Turska-Szewczuk A, Pietras H, Borucki W, Russa R	Acta Biochim Pol	20081552	2008	*
Genetics	Structural studies of the O-polysaccharide chain from the lipopolysaccharide of symbiotically enhanced mutant Mlo-13 of Mesorhizobium loti NZP2213.	Turska-Szewczuk A, Palusinska-Szysz M, Russa R	Carbohydr Res	10.1016/j.carres.2007.11.021	2007	*
Phylogeny	Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L.	Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.64891-0	2007	*
Metabolism	The incomplete substitution of lipopolysaccharide with O-chain prevents the establishment of effective symbiosis between Mesorhizobium loti NZP2213.1 and Lotus corniculatus.	Turska-Szewczuk A, Lotocka B, Kutkowska J, Krol J, Urbanik-Sypniewska T, Russa R	Microbiol Res	10.1016/j.micres.2006.11.011	2007	*
Enzymology	Elucidation of the O-chain structure from the lipopolysaccharide of Agrobacterium tumefaciens strain C58.	De Castro C, Bedini E, Nunziata R, Rinaldi R, Mangoni L, Parrilli M	Carbohydr Res	10.1016/s0008-6215(03)00310-0	2003	*
Phylogeny	A new Mesorhizobium loti HAMBI 1129 phage isolated from Polish soil.	Turska-Szewczuk A, Russa R	Curr Microbiol	10.1007/s002849910067	2000	*
Metabolism	Novel branched nod factor structure results from alpha-(1-->3) fucosyl transferase activity: the major lipo-chitin oligosaccharides from Mesorhizobium loti strain NZP2213 bear an alpha-(1-->3) fucosyl substituent on a nonterminal backbone residue.	Olsthoorn MM, Lopez-Lara IM, Petersen BO, Bock K, Haverkamp J, Spaink HP, Thomas-Oates JE	Biochemistry	10.1021/bi972937r	1998	*
Enzymology	The requirement for exopolysaccharide precedes the requirement for flavolan-binding polysaccharide in nodulation of Leucaena leucocephala by Rhizobium loti.	Hotter GS, Scott DB	Arch Microbiol		1997	*
Phylogeny	Four unnamed species of nonsymbiotic rhizobia isolated from the rhizosphere of Lotus corniculatus.	Sullivan JT, Eardly BD, van Berkum P, Ronson CW	Appl Environ Microbiol	10.1128/aem.62.8.2818-2825.1996	1996	*
Genetics	Novel and complex chromosomal arrangement of Rhizobium loti nodulation genes.	Scott DB, Young CA, Collins-Emerson JM, Terzaghi EA, Rockman ES, Lewis PE, Pankhurst CE	Mol Plant Microbe Interact	10.1094/mpmi-9-0187	1996	*
Enzymology	Chemical characterization of two lipopolysaccharide species isolated from Rhizobium loti NZP2213.	Russa R, Urbanik-Sypniewska T, Lindstrom K, Mayer H	Arch Microbiol	10.1007/BF00404207	1995	*
Phylogeny	Isolation and characterization of transposon Tn5-induced symbiotic mutants of Rhizobium loti.	Chua KY, Pankhurst CE, Macdonald PE, Hopcroft DH, Jarvis BD, Scott DB	J Bacteriol	10.1128/jb.162.1.335-343.1985	1985	*
Enzymology	Transfer of an indigenous plasmid of Rhizobium loti to other rhizobia and Agrobacterium tumefaciens.	Pankhurst CE, Broughton WJ, Wieneke U	J Gen Microbiol	10.1099/00221287-129-8-2535	1983	*
	A Mutation in the Mesorhizobium loti oatB Gene Alters the Physicochemical Properties of the Bacterial Cell Wall and Reduces Survival inside Acanthamoeba castellanii.	Karas MA, Turska-Szewczuk A, Marczak M, Jaszek M, Janczarek M, Dworaczek K, Stefaniuk D, Wydrych J	Int J Mol Sci	10.3390/ijms19113510	2018	*
	Growth and Survival of Mesorhizobium loti Inside Acanthamoeba Enhanced Its Ability to Develop More Nodules on Lotus corniculatus.	Karas MA, Turska-Szewczuk A, Trapska D, Urbanik-Sypniewska T	Microb Ecol	10.1007/s00248-015-0587-6	2015	*

References

#1173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2626

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40706 ; Curators of the CIP;
#61084 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56774

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81097

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264230.1 )

#120655 Collection of Institut Pasteur ; Curators of the CIP; CIP 107326
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mesorhizobium loti in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Mesorhizobium jarvisii ATCC 33669

Mesorhizobium jarvisii ATCC 33669

Change proposal

Change proposal