Name: Aquamicrobium ahrensii 905/1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11867

Type strain:

Species: Aquamicrobium ahrensii

Strain Designation: 905/1

Culture col. no.: DSM 19730, CCUG 55251

Strain history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; 905/1 <- A. Ahrens

NCBI tax ID(s): 469551 (species)

SI-ID 400622

DSM 19730, CCUG 55251

Section

Aquamicrobium ahrensii 905/1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from experimental biofilter for waste gas treatment of an animal rendering plant.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Aquamicrobium*
	Species	**Aquamicrobium ahrensii**
	Full Scientific Name (LPSN)	Aquamicrobium ahrensii Lipski and Kämpfer 2012

Information on morphological and physiological properties Morphology

[Ref.: #30532]	Gram stain	negative

[Ref.: #30532]	Cell shape	rod-shaped

[Ref.: #30532]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8269]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #8269]

Culture medium growth

[Ref.: #8269]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8269]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8269]	growth	28 °C
[Ref.: #30532]	growth	30 °C
[Ref.: #60512]	growth	30 °C

[Ref.: #8269]	Temperature range	mesophilic
[Ref.: #30532]	Temperature range	mesophilic
[Ref.: #60512]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30532]			optimum	7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30532]	Oxygen tolerance	aerobe
[Ref.: #60512]	Oxygen tolerance	aerobe

[Ref.: #30532]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30532]		NaCl		growth	<7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30532]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30532]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30532]	alanine ChEBI	+	carbon source
[Ref.: #30532]	asparagine ChEBI	+	carbon source
[Ref.: #30532]	DL-carnitine ChEBI	+	carbon source
[Ref.: #30532]	fructose ChEBI	+	carbon source
[Ref.: #30532]	gluconate ChEBI	+	carbon source
[Ref.: #30532]	glucose ChEBI	+	carbon source
[Ref.: #30532]	glutamate ChEBI	+	carbon source
[Ref.: #30532]	glycerol ChEBI	+	carbon source
[Ref.: #30532]	histidine ChEBI	+	carbon source
[Ref.: #30532]	lactate ChEBI	+	carbon source
[Ref.: #30532]	leucine ChEBI	+	carbon source
[Ref.: #30532]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30532]	proline ChEBI	+	carbon source
[Ref.: #30532]	propionate ChEBI	+	carbon source
[Ref.: #30532]	serine ChEBI	+	carbon source
[Ref.: #30532]	succinate ChEBI	+	carbon source
[Ref.: #30532]	tween 40 ChEBI	+	carbon source
[Ref.: #30532]	tween 80 ChEBI	+	carbon source
[Ref.: #30532]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30532]		catalase	+	1.11.1.6
[Ref.: #30532]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8269]	Sample type/isolated from	experimental biofilter for waste gas treatment of an animal rendering plant
[Ref.: #8269]	Geographic location (country and/or sea, region)	Lower Saxony, Lingen/Brögbern
[Ref.: #8269]	Country	Germany
[Ref.: #8269]	Country ISO 3 Code	DEU
[Ref.: #8269]	Continent	Europe

[Ref.: #60512]	Sample type/isolated from	Biofilter for treatment of waste gases (animal)
[Ref.: #60512]	Sampling date	1990
[Ref.: #60512]	Geographic location (country and/or sea, region)	Niedersachsen
[Ref.: #60512]	Country	Germany
[Ref.: #60512]	Country ISO 3 Code	DEU
[Ref.: #60512]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Bioremediation	#Biofilter
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Waste gas

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8269]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8269]	Aquamicrobium ahrensii partial 16S rRNA gene, type strain 905/1T	AM884149	1419	ENA	469551 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquamicrobium ahrensii DSM 19730	2928572089	draft	JGI IMG/M	469551 tax ID	*

[Ref.: #8269]	GC-content	60.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30532]	GC-content	60.6 mol%

Availability in culture collections External links

[Ref.: #8269]

Culture collection no.

DSM 19730, CCUG 55251

[Ref.: #81084]

SI-ID 400622

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquamicrobium aestuarii sp. nov., a marine bacterium isolated from a tidal flat.	Jin HM, Kim JM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.048561-0	2013	*
Phylogeny	Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters.	Lipski A, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.038224-0	2011	*

References

#8269

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19730

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30532

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26864 (see below)

#60512 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55251

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81084

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400622.1 )

#26864

IJSEM 2511 2012 ( DOI 10.1099/ijs.0.038224-0 , PubMed 22155762 )

* These data were automatically processed and therefore are not curated

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