Aminobacter aganoensis (DSM 7051, ATCC 49933, JCM 7854)

Name: Aminobacter aganoensis (DSM 7051, ATCC 49933, JCM 7854)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11853

Type strain

Strain Designation TH-3

Culture col. no. DSM 7051 ATCC 49933 JCM 7854 TH-3 CCM 4328 1 more

NCBI tax ID(s) 83264

Special Collections DSMZ JCM

History <- JCM <- T. Urakami, TH-3 T. Urakami TH-3.

Links

Aminobacter aganoensis TH-3 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 46132

ATCC 49933,JCM 7854,DSM 7051,CCM 4328,KACC 10886,KACC 11261,IAM 15266

@ref 20215

Last LPSN update 2026-02-09 11:20:41

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Phyllobacteriaceae

Genus Aminobacter

Species Aminobacter aganoensis

Full scientific name Aminobacter aganoensis Urakami et al. 1992

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.3
125438	negative	98.333

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2961	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2961	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.7

Spore formation

@ref	Spore formation	Confidence
125439		98.3

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2961	soil
67770	Soil	Niigata Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AJ011760 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	308
Soil Samples	780
Animal Samples	145
Plant Samples	31
Total Samples	1264

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2961	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3954002v1 assembly for Aminobacter aganoensis JCM 7854	contig	GCA_039540025			83264	75.49
66792	ASM1420697v1 assembly for Aminobacter aganoensis DSM 7051	contig	GCA_014206975	83264.4	2829777543	83264	69.27
124043	ASM4243012v1 assembly for Aminobacter aganoensis JCM 7854	contig	GCA_042430125			83264	55.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Aminobacter aganoensis strain DSM7051T, 16S rRNA gene, partial	AJ011760	1467		83264

GC content

@ref	GC-content (mol%)	Method
67770	63.5
67770	63.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aminobacter aganoensis DSM 7051
NCBI: GCA_014206975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	yes	76.30	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aminobacter aganoensis strain DSM 7051
PATRIC: 83264.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	no
125438	anaerobic	anaerobicⓘ	no	94.63	no
125438	aerobic	aerobicⓘ	yes	83.37	no
125438	spore-forming	spore-formingⓘ	no	84.15	no
125438	thermophilic	thermophileⓘ	no	98.67	yes
125438	flagellated	motile2+ⓘ	yes	62.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomic Reconstruction and Metabolic Potential of the Genus Aminobacter.	Artuso I, Turrini P, Pirolo M, Lugli GA, Ventura M, Visca P.	Microorganisms	10.3390/microorganisms9061332	2021

References

#2961	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7051
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aminobacter aganoensis (DSM 7051, ATCC 49933, JCM 7854)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039540025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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