Name: Sporacetigenium mesophilum ZLJ 115
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11849

Type strain:

Species: Sporacetigenium mesophilum

Strain Designation: ZLJ 115

Culture col. no.: DSM 16796, AS 1.5019

Strain history: <- S. Chen, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; ZLJ 115 <- S. Chen {2003}

NCBI tax ID(s): 1123280 (strain), 286803 (species)

SI-ID 291004

AS 1.5019, DSM 16796, CGMCC 1.5019

Section

Sporacetigenium mesophilum ZLJ 115 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from sludge of an anaerobic digester treating municipal solid waste and sewage.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptostreptococcaceae*
	Genus	*Sporacetigenium*
	Species	**Sporacetigenium mesophilum**
	Full Scientific Name (LPSN)	Sporacetigenium mesophilum Chen et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31496]	Gram stain	positive

[Ref.: #31496]	Cell length	3.6-7.3 µm

[Ref.: #31496]	Cell width	0.9-1 µm

[Ref.: #31496]	Cell shape	rod-shaped

[Ref.: #31496]	Motility	yes

[Ref.: #31496]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6608]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #6608]

Culture medium growth

[Ref.: #6608]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6608]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6608]	growth	37 °C
[Ref.: #31496]	growth	20-42 °C
[Ref.: #31496]	optimum	37 °C

[Ref.: #6608]	Temperature range	mesophilic
[Ref.: #31496]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31496]			optimum	6.5-7
[Ref.: #31496]			growth	5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6608]	Oxygen tolerance	anaerobe
[Ref.: #31496]	Oxygen tolerance	anaerobe

[Ref.: #31496]

Ability of spore formation

yes

[Ref.: #31496]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31496]	arabinose ChEBI	+	carbon source
[Ref.: #31496]	esculin ChEBI	+	hydrolysis
[Ref.: #31496]	fructose ChEBI	+	carbon source
[Ref.: #31496]	galactose ChEBI	+	carbon source
[Ref.: #31496]	rhamnose ChEBI	+	carbon source
[Ref.: #31496]	ribose ChEBI	+	carbon source
[Ref.: #31496]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6608]	Sample type/isolated from	sludge of an anaerobic digester treating municipal solid waste and sewage
[Ref.: #6608]	Geographic location (country and/or sea, region)	Fujian province, Zhangzhou
[Ref.: #6608]	Country	China
[Ref.: #6608]	Country ISO 3 Code	CHN
[Ref.: #6608]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Solid waste
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY682207 (>99% sequence identity) for Sporacetigenium mesophilum subclade from Microbeatlas

Aquatic Samples	705
Soil Samples	1480
Animal Samples	463
Plant Samples	113
Total Samples	2761

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6608]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6608]	Sporacetigenium mesophilum strain ZLJ115 16S ribosomal RNA gene, partial sequence	AY682207	1495	ENA	286803 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporacetigenium mesophilum DSM 16796	2574180449	draft	JGI IMG/M	1123280 tax ID	*

[Ref.: #6608]

GC-content

53.9-54.3 mol%

Availability in culture collections External links

[Ref.: #6608]

Culture collection no.

DSM 16796, AS 1.5019

[Ref.: #81067]

SI-ID 291004

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporacetigenium mesophilum gen. nov., sp. nov., isolated from an anaerobic digester treating municipal solid waste and sewage.	Chen S, Song L, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63686-0	2006	*

References

#6608

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31496

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27794 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81067

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291004.1 )

#27794

IJSEM 721 2006 ( DOI 10.1099/ijs.0.63686-0 , PubMed 16585683 )

* These data were automatically processed and therefore are not curated

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