Name: Pelotomaculum terephthalicicum JT
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11838

Type strain:

Species: Pelotomaculum terephthalicicum

Strain Designation: JT

Culture col. no.: DSM 16121, JCM 11824, NBRC 100523

Strain history: Y. Qiu strain JT.

NCBI tax ID(s): 947009 (strain), 206393 (species)

SI-ID 297293

DSM 16121, JCM 11824, NBRC 100523

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Pelotomaculum terephthalicicum JT is an anaerobe, mesophilic bacterium that was isolated from anaerobic mesophilic granular sludge.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Pelotomaculum*
	Species	**Pelotomaculum terephthalicicum**
	Full Scientific Name (LPSN)	Pelotomaculum terephthalicicum corrig. Qiu et al. 2006

Synonym

Pelotomaculum terephthalicum

Information on morphological and physiological properties Morphology

[Ref.: #6304]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6304]

Culture medium

PELOTOMACULUM MEDIUM (DSMZ Medium 960)

[Ref.: #6304]

Culture medium growth

[Ref.: #6304]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6304]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6304]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6304]

Oxygen tolerance

anaerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6304]	Sample type/isolated from	anaerobic mesophilic granular sludge
[Ref.: #6304]	Geographic location (country and/or sea, region)	Niigata, Nagaoka
[Ref.: #6304]	Country	Japan
[Ref.: #6304]	Country ISO 3 Code	JPN
[Ref.: #6304]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Anaerobic sludge treating wastewater from the manufacturing of terephthalic acid
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB091323 (>99% sequence identity) for Pelotomaculum terephthalicicum subclade from Microbeatlas

Aquatic Samples	116
Soil Samples	8
Animal Samples	132
Plant Samples	16
Total Samples	272

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6304]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6304]	Pelotomaculum terephthalicicum gene for 16S rRNA, partial sequence	AB091323	1483	GenBank ENA	947009 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pelotomaculum terephthalicicum JT	GCA_022410535	contig	GenBank ENA	947009 tax ID	*

[Ref.: #67770]

GC-content

53.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pelotomaculum terephthalicicum JT JT NCBI: GCA_022410535.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	57.126	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	88.176	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	88.534	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	74.863	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	64.585	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	69.07	no

Availability in culture collections External links

[Ref.: #6304]

Culture collection no.

DSM 16121, JCM 11824, NBRC 100523

[Ref.: #81056]

SI-ID 297293

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pelotomaculum terephthalicum sp. nov. and Pelotomaculum isophthalicum sp. nov.: two anaerobic bacteria that degrade phthalate isomers in syntrophic association with hydrogenotrophic methanogens.	Qiu YL, Sekiguchi Y, Hanada S, Imachi H, Tseng IC, Cheng SS, Ohashi A, Harada H, Kamagata Y	Arch Microbiol	10.1007/s00203-005-0081-5	2006	*

References

#6304

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16121

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81056

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297293.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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Pelotomaculum terephthalicicum JT JT

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