Pelotomaculum sp. (DSM 16145, FP, JCM 12326)

Name: Pelotomaculum sp. (DSM 16145, FP, JCM 12326)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11837

Type strain

Strain Designation FP

Culture col. no. DSM 16145 FP JCM 12326

NCBI tax ID(s) 2053590

Special Collections DSMZ JCM

History <- H. Imachi, Nagaoka University of Technology, Japan; FP <- H. Imachi; {2003} H. Imachi strain FP.

Links

FP is an anaerobe, mesophilic prokaryote that was isolated from rice paddy soil.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399273

DSM 16145

@ref 20215

Last LPSN update 2026-02-09 11:20:40

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Pelotomaculum

Full scientific name Pelotomaculum Imachi et al. 2002

Morphology

Colony morphology

6311

Incubation period>14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6311	PELOTOMACULUM MEDIUM (DSMZ Medium 960)		Medium recipe at MediaDive	Name: PELOTOMACULUM MEDIUM (DSMZ Medium 960; with strain-specific modifications) Composition: Na-propionate 1.99601 g/l Na2CO3 1.49701 g/l NH4Cl 0.538922 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgCl2 x 6 H2O 0.199601 g/l KH2PO4 0.139721 g/l Yeast extract 0.0998004 g/l Nitrilotriacetic acid 0.0127745 g/l NaCl 0.000998004 g/l FeCl2 x 4 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l NiCl2 x 6 H2O 9.98004e-05 g/l ZnCl2 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l CaCl2 x 2 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Na2WO4 x 2 H2O 3.99202e-05 g/l CoCl2 x 6 H2O 2.99401e-05 g/l Na2MoO4 x 2 H2O 2.99401e-05 g/l Na2SeO3 x 5 H2O 2.99401e-05 g/l CuCl2 1.99601e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 9.98004e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6311	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6311	anaerobe
125439	anaerobe	95.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6311	rice paddy soil	Niigata, Nagaoka	Japan	JPN	Asia
67770	Rice paddy soil		Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM436924v1 assembly for Pelotomaculum sp. FP	contig	GCA_004369245	261474.3	2883581706	261474	42.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6311	Pelotomaculum sp. FP gene for 16S rRNA, complete sequence, rrnA	AB159557	1572		261474
6311	Pelotomaculum sp. FP gene for 16S rRNA, complete sequence, rrnB	AB159558	1499		261474

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pelotomaculum sp. FP
NCBI: GCA_004369245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	61.50	no
125439	motility	BacteriaNetⓘ	yes	51.50	no
125439	gram_stain	BacteriaNetⓘ	negative	59.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pelotomaculum sp. FP
PATRIC: 261474.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	53.06	no
125438	anaerobic	anaerobicⓘ	yes	82.49	yes
125438	spore-forming	spore-formingⓘ	yes	73.08	no
125438	aerobic	aerobicⓘ	no	90.95	yes
125438	thermophilic	thermophileⓘ	no	72.50	yes
125438	flagellated	motile2+ⓘ	yes	65.66	no

Literature

References

#6311	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16145
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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