Desulforamulus putei (DSM 12395, SMCC W459, CCUG 55205)

Name: Desulforamulus putei (DSM 12395, SMCC W459, CCUG 55205)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11823

Type strain

Strain Designation TH-11

Culture col. no. DSM 12395 SMCC W459 CCUG 55205 ATCC 700427 OCM 459 1 more

NCBI tax ID(s) 1121429 74701

Special Collections DSMZ CCUG

History <- D. R. Boone, Oregon Graduate Institute of Science and Technology, Portland, Orgeon, USA; TH-11

Links

Desulforamulus putei TH-11 is an anaerobe, thermophilic prokaryote that was isolated from 2.7 km deep terrestrial subsurface.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 264343

ATCC 700427,DSM 12395

@ref 20215

Last LPSN update 2026-02-09 11:20:40

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Desulforamulus

Species Desulforamulus putei

Full scientific name Desulforamulus putei (Liu et al. 1997) Watanabe et al. 2021

Synonyms (1)

Desulfotomaculum putei

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4629	DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4629	positive	growth	55	thermophilic
60499	positive	growth	55-64	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4629	anaerobe
60499	anaerobe
125439	anaerobe	97.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
4629	2.7 km deep terrestrial subsurface		VA, Taylorsville Triassic Basin	USA	USA	North America
60499	2.7 km deep terrestrial susurface (enrichment)	1997	Virginia,Taylorsville Triassic Basin	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF053929 (>99% sequence identity) for Desulfotomaculum putei from Microbeatlas

Aquatic Samples	7
Soil Samples	2
Animal Samples	4
Plant Samples
Total Samples	13

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4629	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2582580748 annotated assembly for Desulforamulus putei DSM 12395	scaffold	GCA_900129195	1121429.4	2582580748	1121429	64.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4629	Desulfotomaculum putei strain SMCC W459 16S ribosomal RNA gene, partial sequence	AF053929	1361		74701

GC content

@ref	GC-content (mol%)	Method
4629	48.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulforamulus putei DSM 12395
NCBI: GCA_900129195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	65.30	no
125439	motility	BacteriaNetⓘ	no	59.80	no
125439	gram_stain	BacteriaNetⓘ	negative	75.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfotomaculum putei DSM 12395 DSM 12395
NCBI: GCA_900129195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	53.32	no
125438	anaerobic	anaerobicⓘ	yes	88.92	no
125438	aerobic	aerobicⓘ	no	94.68	no
125438	spore-forming	spore-formingⓘ	yes	76.05	no
125438	thermophilic	thermophileⓘ	yes	56.27	yes
125438	flagellated	motile2+ⓘ	yes	71.78	no

Literature

References

#4629	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12395
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60499	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55205
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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