Name: Desulforamulus putei TH-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11823

Type strain:

Species: Desulforamulus putei

Strain Designation: TH-11

Culture col. no.: DSM 12395, SMCC W459, CCUG 55205, ATCC 700427, OCM 459

Strain history: <- D. R. Boone, Oregon Graduate Institute of Science and Technology, Portland, Orgeon, USA; TH-11

NCBI tax ID(s): 74701 (species)

SI-ID 264343

ATCC 700427, DSM 12395

Section

Desulforamulus putei TH-11 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from 2.7 km deep terrestrial subsurface.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulforamulus*
	Species	**Desulforamulus putei**
	Full Scientific Name (LPSN)	Desulforamulus putei (Liu et al. 1997) Watanabe et al. 2021

Synonym

Desulfotomaculum putei

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.151

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4629]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #4629]

Culture medium growth

[Ref.: #4629]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4629]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4629]			growth	55 °C
[Ref.: #60499]			growth	55-64 °C

[Ref.: #4629]	Temperature range	thermophilic
[Ref.: #60499]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.66

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4629]	Oxygen tolerance	anaerobe
[Ref.: #60499]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.323

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4629]	Sample type/isolated from	2.7 km deep terrestrial subsurface
[Ref.: #4629]	Geographic location (country and/or sea, region)	VA, Taylorsville Triassic Basin
[Ref.: #4629]	Country	USA
[Ref.: #4629]	Country ISO 3 Code	USA
[Ref.: #4629]	Continent	North America

[Ref.: #60499]	Sample type/isolated from	2.7 km deep terrestrial susurface (enrichment)
[Ref.: #60499]	Sampling date	1997
[Ref.: #60499]	Geographic location (country and/or sea, region)	Virginia,Taylorsville Triassic Basin
[Ref.: #60499]	Country	USA
[Ref.: #60499]	Country ISO 3 Code	USA
[Ref.: #60499]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF053929 (>99% sequence identity) for Desulfotomaculum putei from Microbeatlas

Aquatic Samples	7
Soil Samples	2
Animal Samples	4
Plant Samples
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4629]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4629]	Desulfotomaculum putei strain SMCC W459 16S ribosomal RNA gene, partial sequence	AF053929	1361	ENA	74701 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulforamulus putei DSM 12395	GCA_900129195	scaffold	GenBank	1121429 tax ID	*
[Ref.: #66792]	Desulfotomaculum putei DSM 12395	1121429.4	wgs	PATRIC	1121429 tax ID	*
[Ref.: #66792]	Desulfotomaculum putei DSM 12395	2582580748	draft	JGI IMG/M	1121429 tax ID	*

[Ref.: #4629]

GC-content

48.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfotomaculum putei DSM 12395 DSM 12395 NCBI: GCA_900129195.1
[Ref.: #69481]	spore-forming	no	64	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfotomaculum putei DSM 12395 DSM 12395 NCBI: GCA_900129195.1
[Ref.: #69480]	motile	yes	88.126	no
[Ref.: #69480]	flagellated	no	86.78	no
[Ref.: #69480]	gram-positive	no	83.622	no
[Ref.: #69480]	anaerobic	yes	99.604	yes
[Ref.: #69480]	aerobic	no	97.765	yes
[Ref.: #69480]	halophile	no	94.366	no
[Ref.: #69480]	spore-forming	yes	94.181	no
[Ref.: #69480]	thermophile	yes	98.672	no
[Ref.: #69480]	glucose-util	yes	79.71	no
[Ref.: #69480]	glucose-ferment	no	76.368	no

Availability in culture collections External links

[Ref.: #4629]

Culture collection no.

DSM 12395, SMCC W459, CCUG 55205, ATCC 700427, OCM 459

[Ref.: #81041]	SI-ID 264343	*
[Ref.: #81042]	SI-ID 409114	*

References

#4629

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12395

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#60499 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55205

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81041

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264343.1 )

#81042

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Desulfotomaculum putei in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Desulfotomaculum putei DSM 12395 DSM 12395

Desulfotomaculum putei DSM 12395 DSM 12395

Change proposal

Change proposal