Sporotomaculum syntrophicum (DSM 14795, JCM 11495, FB)

Name: Sporotomaculum syntrophicum (DSM 14795, JCM 11495, FB)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11784

Type strain

Strain Designation FB

Culture col. no. DSM 14795 JCM 11495 FB CIP 108100

NCBI tax ID(s) 182264

Special Collections DSMZ JCM CIP

History <- Y.-L. Qiu, Nagaoka Univ. Technology, Japan; FB <- Y.-L. Qiu {2001} Y.-L. Qiu strain FB.

Links

Sporotomaculum syntrophicum FB is an anaerobe, mesophilic prokaryote that was isolated from anaerobic fludized bed reactor sludge.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 111729

JCM 11495,DSM 14795,CIP 108100

@ref 20215

Last LPSN update 2026-02-09 11:20:39

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Sporotomaculum

Species Sporotomaculum syntrophicum

Full scientific name Sporotomaculum syntrophicum Qiu et al. 2003

BacDive ID	Other strains from **Sporotomaculum syntrophicum** (1)	Type strain
11785	S. syntrophicum FB+M.hungatei, DSM 14947

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5548	PELOTOMACULUM MEDIUM (DSMZ Medium 960)		Medium recipe at MediaDive	Name: PELOTOMACULUM MEDIUM (DSMZ Medium 960; with strain-specific modifications) Composition: Na2CO3 1.49701 g/l Na-crotonate 0.858283 g/l NH4Cl 0.538922 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgCl2 x 6 H2O 0.199601 g/l KH2PO4 0.139721 g/l Yeast extract 0.0998004 g/l Nitrilotriacetic acid 0.0127745 g/l NaCl 0.000998004 g/l FeCl2 x 4 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l NiCl2 x 6 H2O 9.98004e-05 g/l ZnCl2 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l CaCl2 x 2 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Na2WO4 x 2 H2O 3.99202e-05 g/l CoCl2 x 6 H2O 2.99401e-05 g/l Na2MoO4 x 2 H2O 2.99401e-05 g/l Na2SeO3 x 5 H2O 2.99401e-05 g/l CuCl2 1.99601e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 9.98004e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5548	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

5548

Oxygen toleranceanaerobe

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	-	-
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5548	anaerobic fludized bed reactor sludge	Japan	JPN	Asia
67770	Anaerobic sludge used to treat wastewaters from the manufacture of terephthalic acid

Taxonmaps

69479

Global distribution of 16S sequence AB076610 (>99% sequence identity) for Sporotomaculum syntrophicum subclade from Microbeatlas

Aquatic Samples	186
Soil Samples	538
Animal Samples	87
Plant Samples	60
Total Samples	871

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5548	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM993239v1 assembly for Sporotomaculum syntrophicum FB	scaffold	GCA_009932395	182264.3	2988938690	182264	56.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5548	Sporotomaculum syntrophicum gene for 16S rRNA, partial sequence	AB076610	1510		182264

GC content

@ref	GC-content (mol%)	Method
5548	46.8
67770	46.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporotomaculum syntrophicum FB
NCBI: GCA_009932395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.07	no
125438	anaerobic	anaerobicⓘ	yes	89.32	yes
125438	aerobic	aerobicⓘ	no	91.17	no
125438	spore-forming	spore-formingⓘ	yes	70.28	no
125438	thermophilic	thermophileⓘ	no	65.78	no
125438	flagellated	motile2+ⓘ	no	67.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing.	Qiu YL, Sekiguchi Y, Imachi H, Kamagata Y, Tseng IC, Cheng SS, Ohashi A, Harada H	Arch Microbiol	10.1007/s00203-003-0521-z	2003

References

#5548	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14795
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporotomaculum syntrophicum (DSM 14795, JCM 11495, FB)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009932395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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